RNA id: TU261969


Basic Information

Item Value
RNA id TU261969
length 271
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G230817
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2697490 ~ 2697760 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTAGAGTGAGGCAAGGCCTAATTCTTGCAATGTTTCAGAGATGATGAAATGCAGATTTTGTAATACTCTTAATATGTGAGTCTAGTGTCAGACGAGTGTCAAAAATCACACCAAGGTTACGAGCTTGACTAGATGGAAATACGACACTATCATTTATAATCAAATTAAAATTGCTACCTTTGTGAATAGCCACTGGTGTGCCAATGAGAAAACCTCTGTCTTAGAACAATTCAGTTTTAAAAAATGATGGTGCATCCACGTTTTATTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261968 lncRNA upstream 465 2696513 ~ 2697025 (+) True G230816
TU261853 lncRNA upstream 8275 2633291 ~ 2689215 (+) True G230707
TU261963 lncRNA upstream 85112 2611396 ~ 2612378 (+) True G230812
TU261953 lncRNA upstream 110352 2586915 ~ 2587138 (+) True G230802
TU261856 lncRNA upstream 113717 2582411 ~ 2583773 (+) True G230710
TU261980 lncRNA downstream 85176 2782936 ~ 2783757 (+) True G230828
TU261988 lncRNA downstream 106268 2804028 ~ 2806618 (+) True G230836
TU261983 lncRNA downstream 139397 2837157 ~ 2837639 (+) True G230831
TU261848 lncRNA downstream 140337 2838097 ~ 2843148 (+) True G230702
TU261990 lncRNA downstream 152054 2849814 ~ 2850084 (+) True G230838
CI01000054_02652696_02685815.mRNA mRNA upstream 11657 2652696 ~ 2685833 (+) True CI01000054_02652696_02685815
CI01000054_02613166_02614884.mRNA mRNA upstream 82032 2613058 ~ 2615458 (+) True CI01000054_02613166_02614884
CI01000054_02589793_02592201.mRNA mRNA upstream 104564 2589793 ~ 2592926 (+) True CI01000054_02589793_02592201
CI01000054_02564258_02570248.mRNA mRNA upstream 127085 2563692 ~ 2570405 (+) True CI01000054_02564258_02570248
CI01000054_02500503_02511195.mRNA mRNA upstream 186295 2500503 ~ 2511195 (+) True CI01000054_02500503_02511195
CI01000054_02824071_02824355.mRNA mRNA downstream 126265 2824025 ~ 2824642 (+) True CI01000054_02824071_02824355
CI01000054_02951289_02967370.mRNA mRNA downstream 253155 2950915 ~ 2967660 (+) True CI01000054_02951289_02967370
CI01000054_02975008_02985278.mRNA mRNA downstream 276828 2974588 ~ 2985335 (+) True CI01000054_02975008_02985278
CI01000054_03016199_03016501.mRNA mRNA downstream 318199 3015959 ~ 3016693 (+) True CI01000054_03016199_03016501
CI01000054_03424472_03425704.mRNA mRNA downstream 725294 3423054 ~ 3426433 (+) True CI01000054_03424472_03425704
TU261855 other upstream 393108 2289831 ~ 2304382 (+) True CI01000054_02289802_02330591
TU261003 other upstream 970697 1725669 ~ 1726793 (+) True CI01000054_01725792_01726688
TU260765 other upstream 1035925 1650960 ~ 1661565 (+) True CI01000054_01650242_01665628
TU260728 other upstream 1115421 1578435 ~ 1582069 (+) True G229750
TU260932 other upstream 1290360 1397080 ~ 1407130 (+) False G229936
TU261835 other downstream 380742 3078502 ~ 3087392 (+) True G230689
TU262576 other downstream 1210691 3908451 ~ 3913546 (+) True CI01000054_03848427_03914231
TU263121 other downstream 1709392 4407152 ~ 4450730 (+) True G231863
TU263797 other downstream 2925255 5623015 ~ 5623101 (+) True G232485
TU263881 other downstream 3295900 5993660 ~ 6041863 (+) True G232558

Expression Profile