RNA id: TU262329


Basic Information

Item Value
RNA id TU262329
length 288
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G231144
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 3308072 ~ 3308359 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCAAGTCGTTTCGTGAACAATTTATACTGCGGTGGCTGTTACTGACTATTTAAATCTGGCGGGTTTAGTGTCTGGTGTTTCAAATCCAATGACGCTGGTAGTGACGATTCTCTCTGACCAATCAGTGATCTGCAGTGTTAACATGTCACATTTAGTACGGCTCGCTTGGAACCTCAACCGAGGTGGTACTATTTAAGCGAGCCATACCTTTTCATACCAAGCCATCCCATGCAGTGGCAAAGCACCAAAAAGTGAGCCGAATCAAGCTGTATCGAGCCATACCGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262279 lncRNA downstream 50051 3212056 ~ 3258021 (-) True G231096
TU262191 lncRNA downstream 168459 3139320 ~ 3139613 (-) True G231016
TU262185 lncRNA downstream 191638 3116175 ~ 3116434 (-) True G231010
TU262179 lncRNA downstream 217802 3089984 ~ 3090270 (-) True G231004
TU262178 lncRNA downstream 251132 3056728 ~ 3056940 (-) True G231003
TU262336 lncRNA upstream 7056 3315415 ~ 3315625 (-) True G231151
TU262410 lncRNA upstream 59732 3368091 ~ 3368369 (-) True G231225
TU262419 lncRNA upstream 68036 3376395 ~ 3376607 (-) True G231234
TU262426 lncRNA upstream 73894 3382253 ~ 3383001 (-) True G231241
TU262442 lncRNA upstream 86328 3394687 ~ 3395367 (-) True G231257
CI01000054_03082593_03087260.mRNA mRNA downstream 220527 3082348 ~ 3087545 (-) True CI01000054_03082593_03087260
CI01000054_03049995_03054032.mRNA mRNA downstream 254040 3049864 ~ 3054032 (-) True CI01000054_03049995_03054032
CI01000054_03032517_03047094.mRNA mRNA downstream 260978 3031826 ~ 3047094 (-) True CI01000054_03032517_03047094
CI01000054_03018229_03030984.mRNA mRNA downstream 277088 3018076 ~ 3030984 (-) True CI01000054_03018229_03030984
CI01000054_02999099_03015534.mRNA mRNA downstream 292538 2998780 ~ 3015534 (-) True CI01000054_02999099_03015534
CI01000054_03485424_03500327.mRNA mRNA upstream 176469 3484828 ~ 3500489 (-) True CI01000054_03485424_03500327
CI01000054_03918853_03925416.mRNA mRNA upstream 610039 3918398 ~ 3925416 (-) True CI01000054_03918853_03925416
CI01000054_03964701_03964965.mRNA mRNA upstream 656331 3964690 ~ 3964965 (-) True CI01000054_03964701_03964965
CI01000054_03998494_04025965.mRNA mRNA upstream 690059 3998418 ~ 4026082 (-) True CI01000054_03998494_04025965
CI01000054_04067809_04076131.mRNA mRNA upstream 759440 4067799 ~ 4076762 (-) True CI01000054_04067809_04076131
TU262068 other downstream 244729 3057648 ~ 3063343 (-) True G230908
TU262064 other downstream 447499 2854141 ~ 2859545 (-) False G230906
TU262065 other downstream 447499 2854141 ~ 2859545 (-) True G230906
TU262094 other downstream 470390 2837237 ~ 2837682 (-) True G230923
TU261213 other downstream 2077937 1226423 ~ 1230135 (-) False G230178
TU262888 other upstream 673488 3981847 ~ 3982823 (-) True G231645
TU263226 other upstream 1361792 4672197 ~ 4672233 (-) True G231958
TU263225 other upstream 1361913 4672197 ~ 4672233 (-) True G231958
TU263564 other upstream 1897840 5206199 ~ 5209240 (-) True G232274
TU265088 other upstream 3319723 6649149 ~ 6654013 (-) True G233619

Expression Profile