RNA id: TU262442


Basic Information

Item Value
RNA id TU262442
length 681
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G231257
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 3394687 ~ 3395367 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGAATTTGGAGCGATTCTGATATTCTGTGTTCCGCACCTAGGCTGAAGTTGGTCCTCGTCTGCTTTTTTTCGGCCGATTCGACATGTTGAATCGGCGTCGGAGCTCGTCGGTCAGTCGGGCCATCTGATCATTCTGATTGGCTGTTCAGCTACTGCCACCTGCTGGTAAGGAAAGGCATTTCTTCTTACGCAGGCGCAGAACGGACGTGCTACTTGGCCGTCGGCTGTCGAGCGTCGGTTTGGTGTGTCAGGGCAACTTTGGACCCAGATGCTGCCGATGTGAGCCAACCCCACAGTCTGCTTTTGTCGCCACTAGTTCGGTGGTGTCAGCTTGGTGTGTTCTGGGCTTTACACACACCACTTAAACCTAAATTAATCATTCATAAAGTTTGAAAAGTTTGAAGTGAATTACAAATCTCACATCATAAAAGCATTCTGAGCTGAGGTGAAAGTATATTTAACCACTTACATGACTCAGCCGAACGCACGAGCGCTGTCGAGCAGTCTTCTTCGTGAGCGTTTGAGAGTGTGCAGTTAAAAACTAGCCTAGAGCACCATCTGCTGTTAAAACTAAGCTCAGAATCGATTAGAGAGAAAATAAATTCAGATTTATTGTATCAATCGAGAATCGATGTATCGTCGCAGCCCTAAGAATCATAAGTGATATGATTTTAAGAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262426 lncRNA downstream 11686 3382253 ~ 3383001 (-) True G231241
TU262419 lncRNA downstream 18080 3376395 ~ 3376607 (-) True G231234
TU262410 lncRNA downstream 26318 3368091 ~ 3368369 (-) True G231225
TU262336 lncRNA downstream 79062 3315415 ~ 3315625 (-) True G231151
TU262329 lncRNA downstream 86328 3308072 ~ 3308359 (-) True G231144
TU262688 lncRNA upstream 54733 3450100 ~ 3450452 (-) True G231453
TU262710 lncRNA upstream 58142 3453509 ~ 3453731 (-) True G231475
TU262732 lncRNA upstream 125582 3520949 ~ 3573885 (-) True G231496
TU262779 lncRNA upstream 260058 3655425 ~ 3659900 (-) True G231543
TU262782 lncRNA upstream 267492 3662859 ~ 3708165 (-) True G231544
CI01000054_03082593_03087260.mRNA mRNA downstream 307142 3082348 ~ 3087545 (-) True CI01000054_03082593_03087260
CI01000054_03049995_03054032.mRNA mRNA downstream 340655 3049864 ~ 3054032 (-) True CI01000054_03049995_03054032
CI01000054_03032517_03047094.mRNA mRNA downstream 347593 3031826 ~ 3047094 (-) True CI01000054_03032517_03047094
CI01000054_03018229_03030984.mRNA mRNA downstream 363703 3018076 ~ 3030984 (-) True CI01000054_03018229_03030984
CI01000054_02999099_03015534.mRNA mRNA downstream 379153 2998780 ~ 3015534 (-) True CI01000054_02999099_03015534
CI01000054_03485424_03500327.mRNA mRNA upstream 89461 3484828 ~ 3500489 (-) True CI01000054_03485424_03500327
CI01000054_03918853_03925416.mRNA mRNA upstream 523031 3918398 ~ 3925416 (-) True CI01000054_03918853_03925416
CI01000054_03964701_03964965.mRNA mRNA upstream 569323 3964690 ~ 3964965 (-) True CI01000054_03964701_03964965
CI01000054_03998494_04025965.mRNA mRNA upstream 603051 3998418 ~ 4026082 (-) True CI01000054_03998494_04025965
CI01000054_04067809_04076131.mRNA mRNA upstream 672432 4067799 ~ 4076762 (-) True CI01000054_04067809_04076131
TU262068 other downstream 331344 3057648 ~ 3063343 (-) True G230908
TU262064 other downstream 534114 2854141 ~ 2859545 (-) False G230906
TU262065 other downstream 534114 2854141 ~ 2859545 (-) True G230906
TU262094 other downstream 557005 2837237 ~ 2837682 (-) True G230923
TU261213 other downstream 2164552 1226423 ~ 1230135 (-) False G230178
TU262888 other upstream 586480 3981847 ~ 3982823 (-) True G231645
TU263226 other upstream 1274784 4672197 ~ 4672233 (-) True G231958
TU263225 other upstream 1274905 4672197 ~ 4672233 (-) True G231958
TU263564 other upstream 1810832 5206199 ~ 5209240 (-) True G232274
TU265088 other upstream 3232715 6649149 ~ 6654013 (-) True G233619

Expression Profile