RNA id: TU262782


Basic Information

Item Value
RNA id TU262782
length 833
lncRNA type read_through
GC content 0.51
exon number 8
gene id G231544
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 3662859 ~ 3708165 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGGTTCTTTAGCTTTCTGCGCTAACACTGCAAAGGTGGACAGCTTGCTGCACAGACATTTGGTGTGGGAGACTGCCGGCGATGGGAGCGTTTGGCAGCTCTCTGCGTCCCAGTTTTCTTCGCCAGCCTCTGGGTCTCCGTAGTCCCAGACAACACATTGAGGATCTGTTGTGCCATTGAGCAAAGGTGCAAGTTCCACTGATACCAAGGGCTCGGTTGGTCTCGGTAAAGGACGCACCGTCACTGTCAGAATCTTTGAGCTGATTACGAATGGATCTTTTGGTGGGGGCATTATGAAGCCGAGGGTGCGGTACAGGATGGCTCCGATGACGAAATATGGTGTGTCGTCTGATTCATCGGAGGACAAGGTAAAGACTTCTTTGGGGATGAAGAGTTTGTCGTCTGCAGAGCGTGCCCAGTCTTTCATCCCTCTCCTCCCCTTCATGGGGAAGTTGATGTCACTGGAAACAGCCGAAACTGGCTCCCGCTGGATGGTAATTATGAGGTTGTTGGTGACAACCAGAAAGCTCTGGAACGGCTTCTGAGCTTCTCCAATTAGATGAATGAAGTCTTCCACAACTCGCATCAGTAACACAGAACCCGGAGAGACCTGGTGAGCGTCTTCCCACTTCTCAAGGTTTTCAATGTCCAACATTAAGCTGACAATCTGGAAGAATTTCTGCACGTCGTCAGGAGCTGGGATGTAGGTTGCTCGCTTGAAGGTGTCCGTCACATTTCGGAGAATCTCCACGGAGAATAAGAGGTCGCCGCTATAATAATTCTTACGGGACATTAACTCCAGGAGACTCCTCACGATCTGAGACATGCCCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262779 lncRNA downstream 2959 3655425 ~ 3659900 (-) True G231543
TU262732 lncRNA downstream 88974 3520949 ~ 3573885 (-) True G231496
TU262710 lncRNA downstream 209128 3453509 ~ 3453731 (-) True G231475
TU262688 lncRNA downstream 212407 3450100 ~ 3450452 (-) True G231453
TU262442 lncRNA downstream 267492 3394687 ~ 3395367 (-) True G231257
TU262798 lncRNA upstream 4080 3712245 ~ 3712718 (-) True G231560
TU262811 lncRNA upstream 71467 3779632 ~ 3783260 (-) True G231573
TU262831 lncRNA upstream 76853 3785018 ~ 3785222 (-) True G231593
TU262832 lncRNA upstream 77167 3785332 ~ 3785801 (-) True G231594
TU262833 lncRNA upstream 78056 3786221 ~ 3786561 (-) True G231595
CI01000054_03485424_03500327.mRNA mRNA downstream 162370 3484828 ~ 3500489 (-) True CI01000054_03485424_03500327
CI01000054_03082593_03087260.mRNA mRNA downstream 575314 3082348 ~ 3087545 (-) True CI01000054_03082593_03087260
CI01000054_03049995_03054032.mRNA mRNA downstream 608827 3049864 ~ 3054032 (-) True CI01000054_03049995_03054032
CI01000054_03032517_03047094.mRNA mRNA downstream 615765 3031826 ~ 3047094 (-) True CI01000054_03032517_03047094
CI01000054_03018229_03030984.mRNA mRNA downstream 631875 3018076 ~ 3030984 (-) True CI01000054_03018229_03030984
CI01000054_03918853_03925416.mRNA mRNA upstream 210233 3918398 ~ 3925416 (-) True CI01000054_03918853_03925416
CI01000054_03964701_03964965.mRNA mRNA upstream 256525 3964690 ~ 3964965 (-) True CI01000054_03964701_03964965
CI01000054_03998494_04025965.mRNA mRNA upstream 290253 3998418 ~ 4026082 (-) True CI01000054_03998494_04025965
CI01000054_04067809_04076131.mRNA mRNA upstream 359634 4067799 ~ 4076762 (-) True CI01000054_04067809_04076131
CI01000054_04210959_04214380.mRNA mRNA upstream 501675 4209840 ~ 4214380 (-) True CI01000054_04210959_04214380
TU262068 other downstream 599516 3057648 ~ 3063343 (-) True G230908
TU262064 other downstream 802286 2854141 ~ 2859545 (-) False G230906
TU262065 other downstream 802286 2854141 ~ 2859545 (-) True G230906
TU262094 other downstream 825177 2837237 ~ 2837682 (-) True G230923
TU261213 other downstream 2432724 1226423 ~ 1230135 (-) False G230178
TU262888 other upstream 273682 3981847 ~ 3982823 (-) True G231645
TU263226 other upstream 961986 4672197 ~ 4672233 (-) True G231958
TU263225 other upstream 962107 4672197 ~ 4672233 (-) True G231958
TU263564 other upstream 1498034 5206199 ~ 5209240 (-) True G232274
TU265088 other upstream 2919917 6649149 ~ 6654013 (-) True G233619

Expression Profile