RNA id: TU262832


Basic Information

Item Value
RNA id TU262832
length 470
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G231594
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 3785332 ~ 3785801 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACGACGCACTGGCTCTTGCAGTTCAACTGTAGAGATGAGGGGATCAAGCTGACAATCTTTGTGCTTTCTGAGGGGAATCTGAATATTTGCATTTGTGCAAGACAGAGAATCCACAATCATTCTCCTCTTCCAGAAACAATCAGGGACAAATGTGGTCTGATGACAAGCATCGAAATGGTCTGATGACTGCTTATCAGGAGACAGACTGTTTGAAATGGACCGCTGGCTAATTGCCATTGTTCTGGAACAGAGCTTTGATCACTGGGCTAAATCGTGGCAACCCCAAGGAATATTTATTCATTCAGTATCCATGATTGTTCCTTTTCTCCACGTTCTTTTCAGTCTAATAAATTGATTGTAAAATTACAGCATCAAGCATTATAACAACCTCCCTTCACAATAACATGATTAAAACCAGTATAAATTCTAATAATGAGACAAGTCTATACCCATAGGTATAAAGAGTACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262831 lncRNA downstream 110 3785018 ~ 3785222 (-) True G231593
TU262811 lncRNA downstream 2072 3779632 ~ 3783260 (-) True G231573
TU262798 lncRNA downstream 72614 3712245 ~ 3712718 (-) True G231560
TU262782 lncRNA downstream 77167 3662859 ~ 3708165 (-) True G231544
TU262779 lncRNA downstream 125432 3655425 ~ 3659900 (-) True G231543
TU262833 lncRNA upstream 420 3786221 ~ 3786561 (-) True G231595
TU262834 lncRNA upstream 3870 3789671 ~ 3789901 (-) True G231596
TU262835 lncRNA upstream 5363 3791164 ~ 3791387 (-) True G231597
TU262838 lncRNA upstream 21161 3806962 ~ 3807168 (-) True G231600
TU262854 lncRNA upstream 105167 3890968 ~ 3891941 (-) True G231615
CI01000054_03485424_03500327.mRNA mRNA downstream 284843 3484828 ~ 3500489 (-) True CI01000054_03485424_03500327
CI01000054_03082593_03087260.mRNA mRNA downstream 697787 3082348 ~ 3087545 (-) True CI01000054_03082593_03087260
CI01000054_03049995_03054032.mRNA mRNA downstream 731300 3049864 ~ 3054032 (-) True CI01000054_03049995_03054032
CI01000054_03032517_03047094.mRNA mRNA downstream 738238 3031826 ~ 3047094 (-) True CI01000054_03032517_03047094
CI01000054_03018229_03030984.mRNA mRNA downstream 754348 3018076 ~ 3030984 (-) True CI01000054_03018229_03030984
CI01000054_03918853_03925416.mRNA mRNA upstream 132597 3918398 ~ 3925416 (-) True CI01000054_03918853_03925416
CI01000054_03964701_03964965.mRNA mRNA upstream 178889 3964690 ~ 3964965 (-) True CI01000054_03964701_03964965
CI01000054_03998494_04025965.mRNA mRNA upstream 212617 3998418 ~ 4026082 (-) True CI01000054_03998494_04025965
CI01000054_04067809_04076131.mRNA mRNA upstream 281998 4067799 ~ 4076762 (-) True CI01000054_04067809_04076131
CI01000054_04210959_04214380.mRNA mRNA upstream 424039 4209840 ~ 4214380 (-) True CI01000054_04210959_04214380
TU262068 other downstream 721989 3057648 ~ 3063343 (-) True G230908
TU262064 other downstream 924759 2854141 ~ 2859545 (-) False G230906
TU262065 other downstream 924759 2854141 ~ 2859545 (-) True G230906
TU262094 other downstream 947650 2837237 ~ 2837682 (-) True G230923
TU261213 other downstream 2555197 1226423 ~ 1230135 (-) False G230178
TU262888 other upstream 196046 3981847 ~ 3982823 (-) True G231645
TU263226 other upstream 884350 4672197 ~ 4672233 (-) True G231958
TU263225 other upstream 884471 4672197 ~ 4672233 (-) True G231958
TU263564 other upstream 1420398 5206199 ~ 5209240 (-) True G232274
TU265088 other upstream 2842281 6649149 ~ 6654013 (-) True G233619

Expression Profile