RNA id: TU262854


Basic Information

Item Value
RNA id TU262854
length 611
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id G231615
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 3890968 ~ 3891941 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCACTAACCAAAAGTCCCAGAAGCCCCTTTAAAGCGTGCAAATTTAACATAGCGATCTTTTACAAACTACATTACAGTTGCATGACATTATATTTACATTACATTACATTACATTAATGGCAGCTTTAAGTATTAATCATTATTTGCTAAAGTAACATTTGTTTTTATATGTAAACATTTATTGGTGCATTTAAATTTGCTTTAGCTGAAGCTCAGAGTTATCCATGCAGGCCTTCCCAATACAGAAGCCCCACAAAGACAGCAGGATGGAGGAGGAACAGACAGAAAAAGCAGAGGAACACCATGATGCTATCTGTTTAATACTCACCTGTGGGCCTGGGATTCCTACGAAGCCCTGCGGCCCTGGGGGACCTGGAGGGCCTGGTGGTCCAGGAGGACCCTGAGGACCGGGCTGCCACCTGCTCTCACCACCTGGGACCCCAGGTCCGCCAGTTCCAGGGGACGTATATTGCAAACAGTTGCACTCTCCTGGTTCACCCTATGACACAGAAAAACTATTTAGTCACAATGATTTCTACATTTTAAACTATATAAACTGCCACAACTAGGATAACAAATATGCATTTTATTATTTTTGCTTTTTGACAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262838 lncRNA downstream 83800 3806962 ~ 3807168 (-) True G231600
TU262835 lncRNA downstream 99581 3791164 ~ 3791387 (-) True G231597
TU262834 lncRNA downstream 101067 3789671 ~ 3789901 (-) True G231596
TU262833 lncRNA downstream 104407 3786221 ~ 3786561 (-) True G231595
TU262832 lncRNA downstream 105167 3785332 ~ 3785801 (-) True G231594
TU262851 lncRNA upstream 16510 3908451 ~ 3913563 (-) True G231613
TU262901 lncRNA upstream 75786 3967727 ~ 3968020 (-) True G231658
TU262928 lncRNA upstream 132550 4024491 ~ 4089465 (-) True G231684
TU262938 lncRNA upstream 200986 4092927 ~ 4093128 (-) True G231694
TU262943 lncRNA upstream 204325 4096266 ~ 4096985 (-) True G231699
CI01000054_03485424_03500327.mRNA mRNA downstream 390479 3484828 ~ 3500489 (-) True CI01000054_03485424_03500327
CI01000054_03082593_03087260.mRNA mRNA downstream 803423 3082348 ~ 3087545 (-) True CI01000054_03082593_03087260
CI01000054_03049995_03054032.mRNA mRNA downstream 836936 3049864 ~ 3054032 (-) True CI01000054_03049995_03054032
CI01000054_03032517_03047094.mRNA mRNA downstream 843874 3031826 ~ 3047094 (-) True CI01000054_03032517_03047094
CI01000054_03018229_03030984.mRNA mRNA downstream 859984 3018076 ~ 3030984 (-) True CI01000054_03018229_03030984
CI01000054_03918853_03925416.mRNA mRNA upstream 26457 3918398 ~ 3925416 (-) True CI01000054_03918853_03925416
CI01000054_03964701_03964965.mRNA mRNA upstream 72749 3964690 ~ 3964965 (-) True CI01000054_03964701_03964965
CI01000054_03998494_04025965.mRNA mRNA upstream 106477 3998418 ~ 4026082 (-) True CI01000054_03998494_04025965
CI01000054_04067809_04076131.mRNA mRNA upstream 175858 4067799 ~ 4076762 (-) True CI01000054_04067809_04076131
CI01000054_04210959_04214380.mRNA mRNA upstream 317899 4209840 ~ 4214380 (-) True CI01000054_04210959_04214380
TU262068 other downstream 827625 3057648 ~ 3063343 (-) True G230908
TU262064 other downstream 1030395 2854141 ~ 2859545 (-) False G230906
TU262065 other downstream 1030395 2854141 ~ 2859545 (-) True G230906
TU262094 other downstream 1053286 2837237 ~ 2837682 (-) True G230923
TU261213 other downstream 2660833 1226423 ~ 1230135 (-) False G230178
TU262888 other upstream 89906 3981847 ~ 3982823 (-) True G231645
TU263226 other upstream 778210 4672197 ~ 4672233 (-) True G231958
TU263225 other upstream 778331 4672197 ~ 4672233 (-) True G231958
TU263564 other upstream 1314258 5206199 ~ 5209240 (-) True G232274
TU265088 other upstream 2736141 6649149 ~ 6654013 (-) True G233619

Expression Profile