RNA id: TU262901


Basic Information

Item Value
RNA id TU262901
length 294
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G231658
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 3967727 ~ 3968020 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGAACAGTGTGGATAGCAGATTTCCATTTGCATTTACAAAACTTTGCAAATGTTTAGCCTCAGTTAGGTTATGTGACAGCAAAGACCGCTAAAAAAAATTAATAAAATCTCTCAAACATTGTATAAATACAAAACGAATTTTTCTTTTAGGCCTCCCGGTCAATCCTGCTATTCTTGACCGCCATCTGGTGGTTTTACAGGGGCAGTTCAGTCAAATTCTAGGTAGCCTTTTGCTAAGCTAGTGAAGTCTCAATGTACTTTGAATTTAAAGTATAGCTATATTTCGATGTGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262851 lncRNA downstream 54164 3908451 ~ 3913563 (-) True G231613
TU262854 lncRNA downstream 75786 3890968 ~ 3891941 (-) True G231615
TU262838 lncRNA downstream 160559 3806962 ~ 3807168 (-) True G231600
TU262835 lncRNA downstream 176340 3791164 ~ 3791387 (-) True G231597
TU262834 lncRNA downstream 177826 3789671 ~ 3789901 (-) True G231596
TU262928 lncRNA upstream 56471 4024491 ~ 4089465 (-) True G231684
TU262938 lncRNA upstream 124907 4092927 ~ 4093128 (-) True G231694
TU262943 lncRNA upstream 128246 4096266 ~ 4096985 (-) True G231699
TU262994 lncRNA upstream 180340 4148360 ~ 4148564 (-) True G231747
TU263202 lncRNA upstream 246362 4214382 ~ 4215336 (-) True G231940
CI01000054_03964701_03964965.mRNA mRNA downstream 2762 3964690 ~ 3964965 (-) True CI01000054_03964701_03964965
CI01000054_03918853_03925416.mRNA mRNA downstream 42311 3918398 ~ 3925416 (-) True CI01000054_03918853_03925416
CI01000054_03485424_03500327.mRNA mRNA downstream 467238 3484828 ~ 3500489 (-) True CI01000054_03485424_03500327
CI01000054_03082593_03087260.mRNA mRNA downstream 880182 3082348 ~ 3087545 (-) True CI01000054_03082593_03087260
CI01000054_03049995_03054032.mRNA mRNA downstream 913695 3049864 ~ 3054032 (-) True CI01000054_03049995_03054032
CI01000054_03998494_04025965.mRNA mRNA upstream 30398 3998418 ~ 4026082 (-) True CI01000054_03998494_04025965
CI01000054_04067809_04076131.mRNA mRNA upstream 99779 4067799 ~ 4076762 (-) True CI01000054_04067809_04076131
CI01000054_04210959_04214380.mRNA mRNA upstream 241820 4209840 ~ 4214380 (-) True CI01000054_04210959_04214380
CI01000054_04264074_04331270.mRNA mRNA upstream 295842 4263862 ~ 4331270 (-) True CI01000054_04264074_04331270
CI01000054_04411682_04448848.mRNA mRNA upstream 443409 4411429 ~ 4448848 (-) True CI01000054_04411682_04448848
TU262068 other downstream 904384 3057648 ~ 3063343 (-) True G230908
TU262064 other downstream 1107154 2854141 ~ 2859545 (-) False G230906
TU262065 other downstream 1107154 2854141 ~ 2859545 (-) True G230906
TU262094 other downstream 1130045 2837237 ~ 2837682 (-) True G230923
TU261213 other downstream 2737592 1226423 ~ 1230135 (-) False G230178
TU262888 other upstream 13827 3981847 ~ 3982823 (-) True G231645
TU263226 other upstream 702131 4672197 ~ 4672233 (-) True G231958
TU263225 other upstream 702252 4672197 ~ 4672233 (-) True G231958
TU263564 other upstream 1238179 5206199 ~ 5209240 (-) True G232274
TU265088 other upstream 2660062 6649149 ~ 6654013 (-) True G233619

Expression Profile