RNA id: TU262938


Basic Information

Item Value
RNA id TU262938
length 202
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G231694
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 4092927 ~ 4093128 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTCGCTGTAAAATCAAGAAAATGAGATTTAAGCAATAAGACTTTATTGACAATAAGACTTTACGGTTTACGGCGGAAGAGCAACCTCTGACCCGACGCATGACACAATGACGAATGCAGAAGCGGAGAGAATAGAGTAAAACAAATCACTGGTCACGAATTAGAAGTCTAAAATGAGAAATTTTAAAGAGAAATGTCGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262928 lncRNA downstream 3462 4024491 ~ 4089465 (-) True G231684
TU262901 lncRNA downstream 124907 3967727 ~ 3968020 (-) True G231658
TU262851 lncRNA downstream 179364 3908451 ~ 3913563 (-) True G231613
TU262854 lncRNA downstream 200986 3890968 ~ 3891941 (-) True G231615
TU262838 lncRNA downstream 285759 3806962 ~ 3807168 (-) True G231600
TU262943 lncRNA upstream 3138 4096266 ~ 4096985 (-) True G231699
TU262994 lncRNA upstream 55232 4148360 ~ 4148564 (-) True G231747
TU263202 lncRNA upstream 121254 4214382 ~ 4215336 (-) True G231940
TU263259 lncRNA upstream 302849 4395977 ~ 4396286 (-) True G231991
TU263261 lncRNA upstream 305299 4398427 ~ 4399341 (-) True G231993
CI01000054_04067809_04076131.mRNA mRNA downstream 16165 4067799 ~ 4076762 (-) True CI01000054_04067809_04076131
CI01000054_03998494_04025965.mRNA mRNA downstream 66845 3998418 ~ 4026082 (-) True CI01000054_03998494_04025965
CI01000054_03964701_03964965.mRNA mRNA downstream 127962 3964690 ~ 3964965 (-) True CI01000054_03964701_03964965
CI01000054_03918853_03925416.mRNA mRNA downstream 167511 3918398 ~ 3925416 (-) True CI01000054_03918853_03925416
CI01000054_03485424_03500327.mRNA mRNA downstream 592438 3484828 ~ 3500489 (-) True CI01000054_03485424_03500327
CI01000054_04210959_04214380.mRNA mRNA upstream 116712 4209840 ~ 4214380 (-) True CI01000054_04210959_04214380
CI01000054_04264074_04331270.mRNA mRNA upstream 170734 4263862 ~ 4331270 (-) True CI01000054_04264074_04331270
CI01000054_04411682_04448848.mRNA mRNA upstream 318301 4411429 ~ 4448848 (-) True CI01000054_04411682_04448848
CI01000054_04463229_04486856.mRNA mRNA upstream 369760 4462888 ~ 4486856 (-) True CI01000054_04463229_04486856
CI01000054_04671351_04681181.mRNA mRNA upstream 577846 4670974 ~ 4681361 (-) False CI01000054_04671351_04681181
TU262888 other downstream 110104 3981847 ~ 3982823 (-) True G231645
TU262068 other downstream 1029584 3057648 ~ 3063343 (-) True G230908
TU262064 other downstream 1232354 2854141 ~ 2859545 (-) False G230906
TU262065 other downstream 1232354 2854141 ~ 2859545 (-) True G230906
TU262094 other downstream 1255245 2837237 ~ 2837682 (-) True G230923
TU263226 other upstream 577023 4672197 ~ 4672233 (-) True G231958
TU263225 other upstream 577144 4672197 ~ 4672233 (-) True G231958
TU263564 other upstream 1113071 5206199 ~ 5209240 (-) True G232274
TU265088 other upstream 2534954 6649149 ~ 6654013 (-) True G233619
TU265381 other upstream 3072307 7171325 ~ 7171673 (-) True G233891

Expression Profile