RNA id: TU263059



Basic Information


Item Value
RNA id TU263059
length 237
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G231811
representative True

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 4216880 ~ 4217152 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGTGAACGTGATTTCACCAAGTACAACATGTTCCCGGATCAACAATCAGATTTGAGGGACAAGTTTACCATTTATGTCAAGTTTAGGCTTACAACCTGGGTTAGGTGCTTCCACAACAGTGTTATTCAACTATCATTTCCCTCTGATTTTAGGGATAAGTTATGGGTAGGGTTAGGTTTAGGGGTTGGGAAAAGGTTAGGACTAAATTTTAGGAAAGGAATGTTGTTCCAGGATCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU262935 lncRNA upstream 124853 4091604 ~ 4092027 (+) True G231691
TU262570 lncRNA upstream 300488 3914849 ~ 3916392 (+) True G231353
TU262567 lncRNA upstream 384275 3832302 ~ 3832605 (+) True G231350
TU262480 lncRNA upstream 764330 3452331 ~ 3452550 (+) True G231295
TU262479 lncRNA upstream 765222 3451391 ~ 3451658 (+) True G231294
TU263061 lncRNA downstream 6872 4224024 ~ 4231593 (+) True G231813
TU263082 lncRNA downstream 65364 4282516 ~ 4283147 (+) True G231832
TU263141 lncRNA downstream 176142 4393294 ~ 4393526 (+) True G231883
TU263142 lncRNA downstream 178869 4396021 ~ 4396286 (+) True G231884
TU263153 lncRNA downstream 257968 4475120 ~ 4475704 (+) True G231895
CI01000054_03955331_03962388.mRNA mRNA upstream 254485 3955331 ~ 3962395 (+) True CI01000054_03955331_03962388
CI01000054_03848427_03914231.mRNA mRNA upstream 302649 3848427 ~ 3914231 (+) False CI01000054_03848427_03914231
CI01000054_03707961_03761024.mRNA mRNA upstream 455768 3707835 ~ 3761112 (+) True CI01000054_03707961_03761024
CI01000054_03670684_03671857.mRNA mRNA upstream 544877 3670684 ~ 3672003 (+) True CI01000054_03670684_03671857
CI01000054_03558982_03663042.mRNA mRNA upstream 553838 3558982 ~ 3663042 (+) True CI01000054_03558982_03663042
CI01000054_04248925_04249335.mRNA mRNA downstream 31207 4248359 ~ 4249587 (+) False CI01000054_04248925_04249335
CI01000054_04372172_04374454.mRNA mRNA downstream 154273 4371425 ~ 4374901 (+) True CI01000054_04372172_04374454
CI01000054_04453321_04456780.mRNA mRNA downstream 236169 4453321 ~ 4457108 (+) True CI01000054_04453321_04456780
CI01000054_04658039_04659082.mRNA mRNA downstream 440839 4657991 ~ 4659701 (+) True CI01000054_04658039_04659082
CI01000054_04924205_04945546.mRNA mRNA downstream 707007 4924159 ~ 4945841 (+) True CI01000054_04924205_04945546
TU262576 other upstream 303334 3908451 ~ 3913546 (+) True CI01000054_03848427_03914231
TU261835 other upstream 1129488 3078502 ~ 3087392 (+) True G230689
TU261855 other upstream 1912498 2289831 ~ 2304382 (+) True CI01000054_02289802_02330591
TU261003 other upstream 2490087 1725669 ~ 1726793 (+) True CI01000054_01725792_01726688
TU260765 other upstream 2555315 1650960 ~ 1661565 (+) True CI01000054_01650242_01665628
TU263121 other downstream 190000 4407152 ~ 4450730 (+) True G231863
TU263797 other downstream 1405863 5623015 ~ 5623101 (+) True G232485
TU263881 other downstream 1776508 5993660 ~ 6041863 (+) True G232558
TU263932 other downstream 2087155 6304307 ~ 6304441 (+) True G232608
TU264006 other downstream 2157698 6374850 ~ 6375894 (+) True G232659

Expression Profile