RNA id: TU263261


Basic Information

Item Value
RNA id TU263261
length 915
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G231993
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 4398427 ~ 4399341 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGACTGTGTTTACATGAATACTCCACACAGTGGGCTAGGGGTGAGCGATGTACCGGTAGACACGATTAACCAGTAGGAATATGTCAACTGGTAGAGATTTTGGACTATCGTCTCTACCGCGGTTACGCTCATGTGACATTTCTGTGCTGCAAGGTCACGAAAGCTTATCATTTACATGCGTTCTTAAGCACTGCGGTTTAAAATCAATTGATTTTATATGCGCTCACTCTCTGACAGACTGTTTCTCAGCGCTGTCTGAGAGACGTGCGATTTGAAGCTGCTGCTCGTAAAGCGCATGAGAACTGAACTGTGTGCTTTTTGACGCTTAATTGGGCTTAAACGGTTAAATTCACATACCTATGTGTCAAAGTGACATGTATTTGCAAGTAAACAGAGTAATTTATGTCTTAAGTCAATGTAAACAGTTGAGAAAGAACTGAGAAATTGAGAAAGAACAACGCACGAATATAATGGGACTGTGCAGTCGGTCTTAAAGTGACAGCATCCAAATTTACCTGCTGTCATTAATGCTAATCAAACAACAACAAAAAAAGAGAAAATCTCTCACTGTTCTTGACTGAATCACTTTTGTAACTTTAATAAGAATAAATGTATATTTAATTTACACAGTAAAGACTATGCAACATTTGATTTGATTATATTTACATACGCGATATAGCAAAATCTCTAACGATAGACATTTTCTACCTTGATAACATTATATATCGTCATACCGCCCAGCCCTAGATGTCGAAAATTATAATTATTACGCAAATTACAGCAACAATGTTGCTTGTACTTCTATTTTTCACAGCCTTGTTTTCGTTTGCCTCAAATTGAATATGCCATCTACTTAGTTCCATTGTGCTTACGATGATGAATTTCCTATAGCAGCAGTGAGAATGAGAAAGAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263259 lncRNA downstream 2141 4395977 ~ 4396286 (-) True G231991
TU263202 lncRNA downstream 183091 4214382 ~ 4215336 (-) True G231940
TU262994 lncRNA downstream 249863 4148360 ~ 4148564 (-) True G231747
TU262943 lncRNA downstream 301442 4096266 ~ 4096985 (-) True G231699
TU262938 lncRNA downstream 305299 4092927 ~ 4093128 (-) True G231694
TU263262 lncRNA upstream 295 4399636 ~ 4399997 (-) True G231994
TU263229 lncRNA upstream 191355 4590696 ~ 4602299 (-) True G231961
TU263231 lncRNA upstream 207921 4607262 ~ 4642130 (-) True G231963
TU263271 lncRNA upstream 243705 4643046 ~ 4643322 (-) True G232003
TU263280 lncRNA upstream 265644 4664985 ~ 4665241 (-) True G232012
CI01000054_04264074_04331270.mRNA mRNA downstream 67157 4263862 ~ 4331270 (-) True CI01000054_04264074_04331270
CI01000054_04210959_04214380.mRNA mRNA downstream 184047 4209840 ~ 4214380 (-) True CI01000054_04210959_04214380
CI01000054_04067809_04076131.mRNA mRNA downstream 321665 4067799 ~ 4076762 (-) True CI01000054_04067809_04076131
CI01000054_03998494_04025965.mRNA mRNA downstream 372345 3998418 ~ 4026082 (-) True CI01000054_03998494_04025965
CI01000054_03964701_03964965.mRNA mRNA downstream 433462 3964690 ~ 3964965 (-) True CI01000054_03964701_03964965
CI01000054_04411682_04448848.mRNA mRNA upstream 12088 4411429 ~ 4448848 (-) True CI01000054_04411682_04448848
CI01000054_04463229_04486856.mRNA mRNA upstream 63547 4462888 ~ 4486856 (-) True CI01000054_04463229_04486856
CI01000054_04671351_04681181.mRNA mRNA upstream 271633 4670974 ~ 4681361 (-) False CI01000054_04671351_04681181
CI01000054_05292456_05317677.mRNA mRNA upstream 892958 5292299 ~ 5318991 (-) True CI01000054_05292456_05317677
CI01000054_05341497_05372926.mRNA mRNA upstream 941769 5341110 ~ 5372926 (-) True CI01000054_05341497_05372926
TU262888 other downstream 415604 3981847 ~ 3982823 (-) True G231645
TU262068 other downstream 1335084 3057648 ~ 3063343 (-) True G230908
TU262064 other downstream 1537854 2854141 ~ 2859545 (-) False G230906
TU262065 other downstream 1537854 2854141 ~ 2859545 (-) True G230906
TU262094 other downstream 1560745 2837237 ~ 2837682 (-) True G230923
TU263226 other upstream 270810 4672197 ~ 4672233 (-) True G231958
TU263225 other upstream 270931 4672197 ~ 4672233 (-) True G231958
TU263564 other upstream 806858 5206199 ~ 5209240 (-) True G232274
TU265088 other upstream 2228741 6649149 ~ 6654013 (-) True G233619
TU265381 other upstream 2766094 7171325 ~ 7171673 (-) True G233891

Expression Profile