RNA id: TCONS_00018890


Basic Information

Item Value
RNA id TCONS_00018890
length 632
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id XLOC_008331
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 9640687 ~ 9649456 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGACATTCACTACTTTCGCTTTCAAGAGCAAGCACATGGCAAAAATCACTTGTGAGGCACGGTGAGAAGGCAAACATCTATCCTGTGTGCGTTCATGCCAAGAAAGTAAGTTTATTTACTGATTCCCACCAAAAACATGGGTAATACTTATGTTAATACTGTTGTAACAATATCTGTAATGTTGTATTTCACCTTTAATGCATATATTTGCATAATCTTATGTCATATGTTAATCTGTGTTGGGAAGCTAATATGCTAGTCCAAACTATTTATGCCATAGTATGTTTCCTTGTTggattaatgtatatattttgacaCATGGTGTAATGTTGAGTCATTTCtaaacactacagtttgacagtgAATTTATTCCTATACCTAAAGATTATTTTCTGTTGTAATCTAAATGGAAATGTTTGACTGTTATTTGTTAATTGCTAAACctgtaatattttattgatacttaatttgttctattttatgttccagaccacacacacacacacacacacacacacacgtactcaCTCATTAAAGCTATTTTTGGATGAAACTCTCCGAGCCCTTTACTCTCTTACCGGAGTCTCCAGTTTTCAAGGACTATCAGAACATTCCAGAGGTTCCACCTCAA

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016716 lncRNA upstream 190236 9451978 ~ 9457382 (+) True XLOC_008330
TCONS_00016715 lncRNA upstream 229467 9414153 ~ 9418151 (+) True XLOC_008329
TCONS_00016708 lncRNA upstream 436487 9205264 ~ 9211131 (+) True XLOC_008325
TCONS_00016701 lncRNA upstream 882589 8762580 ~ 8765029 (+) True XLOC_008319
TCONS_00018889 lncRNA upstream 883505 8762474 ~ 8764113 (+) False XLOC_008319
TCONS_00018760 lncRNA downstream 31772 9680021 ~ 9684915 (+) True XLOC_008332
TCONS_00016718 lncRNA downstream 230599 9878848 ~ 9883813 (+) True XLOC_008334
TCONS_00016720 lncRNA downstream 837285 10485534 ~ 10487195 (+) True XLOC_008336
TCONS_00016721 lncRNA downstream 1101959 10750208 ~ 10756943 (+) False XLOC_008337
TCONS_00016722 lncRNA downstream 1101987 10750236 ~ 10756943 (+) False XLOC_008337
TCONS_00016714 mRNA upstream 259828 9387350 ~ 9387790 (+) True XLOC_008328
TCONS_00016713 mRNA upstream 293922 9327252 ~ 9353696 (+) True XLOC_008327
TCONS_00016711 mRNA upstream 332052 9297340 ~ 9315566 (+) False XLOC_008326
TCONS_00016710 mRNA upstream 343357 9294665 ~ 9304261 (+) False XLOC_008326
TCONS_00016709 mRNA upstream 350055 9294620 ~ 9297563 (+) False XLOC_008326
TCONS_00016717 mRNA downstream 213724 9861973 ~ 9873144 (+) True XLOC_008333
TCONS_00016729 mRNA downstream 1733283 11381532 ~ 11394322 (+) True XLOC_008341
TCONS_00016730 mRNA downstream 1779371 11427620 ~ 11443214 (+) True XLOC_008342
TCONS_00016732 mRNA downstream 1995410 11643659 ~ 11671173 (+) True XLOC_008344
TCONS_00016736 mRNA downstream 2045375 11693624 ~ 11757647 (+) False XLOC_008346
TCONS_00016712 other upstream 336140 9303809 ~ 9311478 (+) True XLOC_008326
TCONS_00016703 other upstream 608454 9039050 ~ 9039164 (+) True XLOC_008321
TCONS_00016700 other upstream 915752 8731752 ~ 8731866 (+) True XLOC_008318
TCONS_00016699 other upstream 964681 8682822 ~ 8682937 (+) True XLOC_008317
TCONS_00016681 other upstream 2875498 6770586 ~ 6772120 (+) True XLOC_008302
TCONS_00016719 other downstream 247609 9895858 ~ 9895986 (+) True XLOC_008335
TCONS_00016731 other downstream 1917142 11565391 ~ 11565509 (+) True XLOC_008343
TCONS_00016757 other downstream 3876625 13524874 ~ 13524988 (+) True XLOC_008360
TCONS_00016758 other downstream 4309473 13957722 ~ 13957850 (+) True XLOC_008361
TCONS_00016791 other downstream 5745993 15394242 ~ 15401640 (+) True XLOC_008381

Expression Profile

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