RNA id: TU263280


Basic Information

Item Value
RNA id TU263280
length 257
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G232012
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 4664985 ~ 4665241 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAAAAATCAGGAAGCAGATAAGCCTTTTTCCTCCAGGTTGTCTAAGTTGAGGATCCAGTTAACTAGGAGTTTATTTGGCCACCTGACAGCTGCGCATTTGTTCTATAAACCAATATGCTGTAGACTTTTAATTTTTATTTTTCTGACTTAACAGTTTGCTTATTATTAGCATGTTATTCATTATTCACCGTCATGCTGTCCCAAACCCATATGACTTTATTTTTTCTGGGAAAGACAGAAAATCATTGAAAGTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263271 lncRNA downstream 21663 4643046 ~ 4643322 (-) True G232003
TU263231 lncRNA downstream 22855 4607262 ~ 4642130 (-) True G231963
TU263229 lncRNA downstream 62686 4590696 ~ 4602299 (-) True G231961
TU263262 lncRNA downstream 264988 4399636 ~ 4399997 (-) True G231994
TU263261 lncRNA downstream 265644 4398427 ~ 4399341 (-) True G231993
TU263281 lncRNA upstream 187 4665428 ~ 4665667 (-) True G232013
TU263322 lncRNA upstream 107589 4772830 ~ 4773118 (-) True G232051
TU263348 lncRNA upstream 170615 4835856 ~ 4836109 (-) True G232076
TU263374 lncRNA upstream 237825 4903066 ~ 4917761 (-) True G232102
TU263421 lncRNA upstream 258681 4923922 ~ 5139595 (-) False G232147
CI01000054_04463229_04486856.mRNA mRNA downstream 178129 4462888 ~ 4486856 (-) True CI01000054_04463229_04486856
CI01000054_04411682_04448848.mRNA mRNA downstream 216137 4411429 ~ 4448848 (-) True CI01000054_04411682_04448848
CI01000054_04264074_04331270.mRNA mRNA downstream 333715 4263862 ~ 4331270 (-) True CI01000054_04264074_04331270
CI01000054_04210959_04214380.mRNA mRNA downstream 450605 4209840 ~ 4214380 (-) True CI01000054_04210959_04214380
CI01000054_04067809_04076131.mRNA mRNA downstream 588223 4067799 ~ 4076762 (-) True CI01000054_04067809_04076131
CI01000054_04671351_04681181.mRNA mRNA upstream 5733 4670974 ~ 4681361 (-) False CI01000054_04671351_04681181
CI01000054_05292456_05317677.mRNA mRNA upstream 627058 5292299 ~ 5318991 (-) True CI01000054_05292456_05317677
CI01000054_05341497_05372926.mRNA mRNA upstream 675869 5341110 ~ 5372926 (-) True CI01000054_05341497_05372926
CI01000054_05685529_05686880.mRNA mRNA upstream 1020259 5685500 ~ 5687414 (-) True CI01000054_05685529_05686880
CI01000054_05711250_05711861.mRNA mRNA upstream 1045381 5710622 ~ 5712639 (-) True CI01000054_05711250_05711861
TU262888 other downstream 682162 3981847 ~ 3982823 (-) True G231645
TU262068 other downstream 1601642 3057648 ~ 3063343 (-) True G230908
TU262064 other downstream 1804412 2854141 ~ 2859545 (-) False G230906
TU262065 other downstream 1804412 2854141 ~ 2859545 (-) True G230906
TU262094 other downstream 1827303 2837237 ~ 2837682 (-) True G230923
TU263226 other upstream 4910 4672197 ~ 4672233 (-) True G231958
TU263225 other upstream 5031 4672197 ~ 4672233 (-) True G231958
TU263564 other upstream 540958 5206199 ~ 5209240 (-) True G232274
TU265088 other upstream 1962841 6649149 ~ 6654013 (-) True G233619
TU265381 other upstream 2500194 7171325 ~ 7171673 (-) True G233891

Expression Profile