RNA id: TU263313



Basic Information


Item Value
RNA id TU263313
length 384
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G232042
representative True

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 4735397 ~ 4735780 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGTAGCAAAGTTCAGTATTCAGGAAGGAAGAGGACAGGGTCGGCTTGACTACTGACTGCTTTTTATTTGCAATAATTCTCACAATTCAAAACAAAAGGGGTGCAGACAGGCACAAAGCGGTCACAAATCATTCAGAAGTCTCTCACTCGTAGATCACCAGCGGGGCAGCAGTCAGTAGTCCGTCTCTCTCTCTCCCACACCTGTTTCTCCTGGTGTTATATACTCTCTCCACACCAATTACTGAAACAAGAGACAGGTGTTCGTCATTTGCATTTAACCCACTCACTCACCGTTCGTCTCCTGACTCTCTCTCCCGCTGCCGACTCCGCTGAACCACGCCCCCCTCGCCACAGACCCCCACCGCCTGACTCAGGCCGGGGAGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU263283 lncRNA upstream 50244 4682432 ~ 4685153 (+) True G232014
TU263153 lncRNA upstream 259693 4475120 ~ 4475704 (+) True G231895
TU263142 lncRNA upstream 339111 4396021 ~ 4396286 (+) True G231884
TU263141 lncRNA upstream 341871 4393294 ~ 4393526 (+) True G231883
TU263082 lncRNA upstream 452250 4282516 ~ 4283147 (+) True G231832
TU263319 lncRNA downstream 24203 4759983 ~ 4760217 (+) True G232048
TU263321 lncRNA downstream 36958 4772738 ~ 4772979 (+) True G232050
TU263323 lncRNA downstream 40890 4776670 ~ 4776987 (+) True G232052
TU263349 lncRNA downstream 100499 4836279 ~ 4836518 (+) True G232077
TU263366 lncRNA downstream 156977 4892757 ~ 4893042 (+) True G232094
CI01000054_04658039_04659082.mRNA mRNA upstream 75696 4657991 ~ 4659701 (+) True CI01000054_04658039_04659082
CI01000054_04453321_04456780.mRNA mRNA upstream 278289 4453321 ~ 4457108 (+) True CI01000054_04453321_04456780
CI01000054_04372172_04374454.mRNA mRNA upstream 360496 4371425 ~ 4374901 (+) True CI01000054_04372172_04374454
CI01000054_04248925_04249335.mRNA mRNA upstream 485810 4248359 ~ 4249587 (+) False CI01000054_04248925_04249335
CI01000054_03955331_03962388.mRNA mRNA upstream 773002 3955331 ~ 3962395 (+) True CI01000054_03955331_03962388
CI01000054_04924205_04945546.mRNA mRNA downstream 188379 4924159 ~ 4945841 (+) True CI01000054_04924205_04945546
CI01000054_04962081_04977729.mRNA mRNA downstream 226150 4961930 ~ 4977937 (+) True CI01000054_04962081_04977729
CI01000054_05145255_05217807.mRNA mRNA downstream 409331 5145111 ~ 5217811 (+) True CI01000054_05145255_05217807
CI01000054_05402279_05408977.mRNA mRNA downstream 665667 5401447 ~ 5409085 (+) True CI01000054_05402279_05408977
CI01000054_05409518_05413525.mRNA mRNA downstream 673522 5409302 ~ 5413987 (+) True CI01000054_05409518_05413525
TU263121 other upstream 284667 4407152 ~ 4450730 (+) True G231863
TU262576 other upstream 821851 3908451 ~ 3913546 (+) True CI01000054_03848427_03914231
TU261835 other upstream 1648005 3078502 ~ 3087392 (+) True G230689
TU261855 other upstream 2431015 2289831 ~ 2304382 (+) True CI01000054_02289802_02330591
TU261003 other upstream 3008604 1725669 ~ 1726793 (+) True CI01000054_01725792_01726688
TU263797 other downstream 887235 5623015 ~ 5623101 (+) True G232485
TU263881 other downstream 1257880 5993660 ~ 6041863 (+) True G232558
TU263932 other downstream 1568527 6304307 ~ 6304441 (+) True G232608
TU264006 other downstream 1639070 6374850 ~ 6375894 (+) True G232659
TU264264 other downstream 2152132 6887912 ~ 6888503 (+) False G232870

Expression Profile