RNA id: TU263322


Basic Information

Item Value
RNA id TU263322
length 289
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G232051
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 4772830 ~ 4773118 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGAAAAATGGCTTGTCACAAATCCCTCGAGTTATTATTCTTCCCTCCTGCCTGTTTAGAGCTGACACAAAGTTTCAGTCACACGCTGAAACTCCCAAATTGTACAGTGTCTGTTTTAACTTCTGCTCTTTATTTTAAAGGGAAATATACACACATACATACACATTTTTTGGGCCGAACCATACTTTTAAGAGGAAACATTCTGCCATAATGAAACAACATTGGTGAGCTCTCTTTTTTTTTTTTTTTTTAACTTTTAAAGGGACCCTTGATTATGATTTCACTTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263281 lncRNA downstream 107163 4665428 ~ 4665667 (-) True G232013
TU263280 lncRNA downstream 107589 4664985 ~ 4665241 (-) True G232012
TU263271 lncRNA downstream 129508 4643046 ~ 4643322 (-) True G232003
TU263231 lncRNA downstream 130700 4607262 ~ 4642130 (-) True G231963
TU263229 lncRNA downstream 170531 4590696 ~ 4602299 (-) True G231961
TU263348 lncRNA upstream 62738 4835856 ~ 4836109 (-) True G232076
TU263374 lncRNA upstream 129948 4903066 ~ 4917761 (-) True G232102
TU263421 lncRNA upstream 150804 4923922 ~ 5139595 (-) False G232147
TU263425 lncRNA upstream 150804 4923922 ~ 4945774 (-) False G232147
TU263427 lncRNA upstream 318320 5091438 ~ 5108760 (-) False G232147
CI01000054_04671351_04681181.mRNA mRNA downstream 91469 4670974 ~ 4681361 (-) False CI01000054_04671351_04681181
CI01000054_04463229_04486856.mRNA mRNA downstream 285974 4462888 ~ 4486856 (-) True CI01000054_04463229_04486856
CI01000054_04411682_04448848.mRNA mRNA downstream 323982 4411429 ~ 4448848 (-) True CI01000054_04411682_04448848
CI01000054_04264074_04331270.mRNA mRNA downstream 441560 4263862 ~ 4331270 (-) True CI01000054_04264074_04331270
CI01000054_04210959_04214380.mRNA mRNA downstream 558450 4209840 ~ 4214380 (-) True CI01000054_04210959_04214380
CI01000054_05292456_05317677.mRNA mRNA upstream 519181 5292299 ~ 5318991 (-) True CI01000054_05292456_05317677
CI01000054_05341497_05372926.mRNA mRNA upstream 567992 5341110 ~ 5372926 (-) True CI01000054_05341497_05372926
CI01000054_05685529_05686880.mRNA mRNA upstream 912382 5685500 ~ 5687414 (-) True CI01000054_05685529_05686880
CI01000054_05711250_05711861.mRNA mRNA upstream 937504 5710622 ~ 5712639 (-) True CI01000054_05711250_05711861
CI01000054_05822181_05823458.mRNA mRNA upstream 1049050 5822168 ~ 5823684 (-) False CI01000054_05822181_05823458
TU263226 other downstream 100597 4672197 ~ 4672233 (-) True G231958
TU263225 other downstream 100597 4672197 ~ 4672233 (-) True G231958
TU262888 other downstream 790007 3981847 ~ 3982823 (-) True G231645
TU262068 other downstream 1709487 3057648 ~ 3063343 (-) True G230908
TU262064 other downstream 1912257 2854141 ~ 2859545 (-) False G230906
TU263564 other upstream 433081 5206199 ~ 5209240 (-) True G232274
TU265088 other upstream 1854964 6649149 ~ 6654013 (-) True G233619
TU265381 other upstream 2392317 7171325 ~ 7171673 (-) True G233891
TU266788 other upstream 4474921 9248039 ~ 9248538 (-) True G235216
TU266868 other upstream 4710029 9485215 ~ 9485318 (-) False G235290

Expression Profile