RNA id: TU263425


Basic Information

Item Value
RNA id TU263425
length 916
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G232147
representative False

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 4923922 ~ 5139595 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGCTGAATCAATTTGAGGACTTCAATGTTCAGGACATTAGATACAGACCTGAAATGAAATTTTCGTTCCATTCGGTGTGCTTTAAACAAGTTTTGGGACACTTAAGTAAATCCAAAGTTCACGCACACATTTCACACAGTTCAAACTGTTAGGAAAGTAATGTTGGCTAGCAATTCCAAGAGATATGATCTGGCATTTACACACACAGAATAATAAAGTGTCCTGTATTTACCGTGTCCGTAAATTTGTTGGACTGGGTTGCCCATCGTAGACTGAAAGGATGTCAAAGTCCTCCTCTAAGGCAAAGCCTTGAAATACCAACTGTATCCGGTTGTGTTCCTGTGCCACAATCACCCATGTGCAGTTGGCGTAGTTGGGATATCCATACGGGTATCCGGGGCTTTCTATTGTCCCATTTGGACTGTGTAGTGTGTGACTGCAGTTTTGAGCCTTAACCGATGCAGCCAGCAGCCCCATATAGAAGAACAGCACCCCGCTCCAGTGATGCGCCTGTACTCCCACCTTCATTAGCGCAAAAATCCTTATACCATCCAGTTTCCTCGTCCCGTTAAATGTACATCTGCACTCTGTCCTCACGAGTCCCGTTCTGTCAGGATTAAAAGAGGCGCTCATGGTGGGCTTTTTTTTGGCAGGCACGGTTATCAGATGGTTTTAAAAGGAAGATTCACTTGGTGTCGGCGCTGAGAAAAATCCCAGTGCATGGAGACTGGACCCTCGCAGCTGGACTGAACCATCTCAAGCGAGCCGCGGGGTGAGCCGATTCTAATAGACGCGTTCTCTCCTAAAAGCTGACGAGCTGGTAATGAGAACTGTATCTGGTCTCTTCGAGCTCACATGAACGTTACAAACGGATAAAGTCTGGAGCCGATTCAAACGGATGATGCGACATACGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263374 lncRNA downstream 6161 4903066 ~ 4917761 (-) True G232102
TU263348 lncRNA downstream 87813 4835856 ~ 4836109 (-) True G232076
TU263322 lncRNA downstream 150804 4772830 ~ 4773118 (-) True G232051
TU263281 lncRNA downstream 258255 4665428 ~ 4665667 (-) True G232013
TU263280 lncRNA downstream 258681 4664985 ~ 4665241 (-) True G232012
TU263427 lncRNA upstream 145664 5091438 ~ 5108760 (-) False G232147
TU263426 lncRNA upstream 164911 5110685 ~ 5115725 (-) True G232147
TU263521 lncRNA upstream 197050 5142824 ~ 5153011 (-) True G232236
TU263527 lncRNA upstream 207645 5153419 ~ 5165916 (-) False G232241
TU263534 lncRNA upstream 218152 5163926 ~ 5164299 (-) True G232247
CI01000054_04671351_04681181.mRNA mRNA downstream 242561 4670974 ~ 4681361 (-) False CI01000054_04671351_04681181
CI01000054_04463229_04486856.mRNA mRNA downstream 437066 4462888 ~ 4486856 (-) True CI01000054_04463229_04486856
CI01000054_04411682_04448848.mRNA mRNA downstream 475074 4411429 ~ 4448848 (-) True CI01000054_04411682_04448848
CI01000054_04264074_04331270.mRNA mRNA downstream 592652 4263862 ~ 4331270 (-) True CI01000054_04264074_04331270
CI01000054_04210959_04214380.mRNA mRNA downstream 709542 4209840 ~ 4214380 (-) True CI01000054_04210959_04214380
CI01000054_05292456_05317677.mRNA mRNA upstream 346525 5292299 ~ 5318991 (-) True CI01000054_05292456_05317677
CI01000054_05341497_05372926.mRNA mRNA upstream 395336 5341110 ~ 5372926 (-) True CI01000054_05341497_05372926
CI01000054_05685529_05686880.mRNA mRNA upstream 739726 5685500 ~ 5687414 (-) True CI01000054_05685529_05686880
CI01000054_05711250_05711861.mRNA mRNA upstream 764848 5710622 ~ 5712639 (-) True CI01000054_05711250_05711861
CI01000054_05822181_05823458.mRNA mRNA upstream 876394 5822168 ~ 5823684 (-) False CI01000054_05822181_05823458
TU263226 other downstream 251689 4672197 ~ 4672233 (-) True G231958
TU263225 other downstream 251689 4672197 ~ 4672233 (-) True G231958
TU262888 other downstream 941099 3981847 ~ 3982823 (-) True G231645
TU262068 other downstream 1860579 3057648 ~ 3063343 (-) True G230908
TU262065 other downstream 2063349 2854141 ~ 2859545 (-) True G230906
TU263564 other upstream 260425 5206199 ~ 5209240 (-) True G232274
TU265088 other upstream 1682308 6649149 ~ 6654013 (-) True G233619
TU265381 other upstream 2219661 7171325 ~ 7171673 (-) True G233891
TU266788 other upstream 4302265 9248039 ~ 9248538 (-) True G235216
TU266868 other upstream 4537373 9485215 ~ 9485318 (-) False G235290

Expression Profile