RNA id: TU263427



Basic Information


Item Value
RNA id TU263427
length 1310
lncRNA type inter_gene
GC content 0.49
exon number 7
gene id G232147
representative False

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 4923922 ~ 5139595 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGTCATGGCCCTTTTCAGATCAAAACAGTAATAAATAAATTAGAAGACTATCATACTCTCATATCGGATGCGGAAGCCGATGTCGGAGTGGCTCTTGTCGGTGGTGAAGAGCAGGTAGAGGAAATTTGAGGTGCTGATGAGGAACTGAGGGACCTGTGTACCCTGGTAACTGCCAATCAGAGGTGAAGAAGGATAACGTCCGTCCCGTACCTCGAGAACATCATAGTTAACCTCTGTCCGGAATTTGTCAAAGATGATCTTAATAGGATATCCTGGTGGGGCCTCGATGATCCACTCACAATTGAGAGCCTCTTTATAAAGCTCAGGCCAGCCTGGGGACAGAATGATGCCGCTAGAAGCCTTCAGGTTTCCACCACATGGAGCTTCACAACGTGGCACAGCGTTGTCCCACACAACATTCCCATCTTTGAGAATGCAGGAGATAGTCTGAGATCCGTGGGTCTTCATGAACCCCTCCTCACACAGGAAAGAGATGGAGCTGCCAAGCTGTAGACTCTCACCAAAGCGCTTTCCGTTTACTGGAACGCCAGGGTCGGGACATTCGTTGTGCCGAAACGTGGTGAAAGTGATGTTGAAGCCACGGTCTGTATACGTATGATCGGTCAGAAATTCCAGTCGGGCCACATGGCCGCTGGTAGTGATGGGTGAGGGCAGCACATCTCCAGAAAAGGTGCCAAGAATTGGCGACTCTGCCTTGCCGCCATCTTTAATGGACAGGAAGTCAAATTGTTTCTCCATGCTCAGGTCGTTAAAGGCTAAGTTGATGCGGCTTTCGGGTTTGGCGATGATCAACCACACACAGTGCATGTTGTTGCCGTACTCCTGAGGGTAGTTTGGTGATAGCAGGACCCCAGATGGAGTTGTGAAGTTGAAGAAACATGAAAACACACAGCTTGGCTTCTTGGCTGACCATTGATTATTTTTCTGGCAGGTAATGTTCTTTTTTCCCACCAACTCAAAGGCTGGAAGGCATTCAAAATATAGTTTGTCTCCATGTCGGAAGCCTGTGCCTTCCCTCTTGCCATAGGCTGGGATTCCAGGGTCTCCACACCCACCCTGGTCAATTTCTTCATAAGAAACCTTAAAGCCCAGGGAGCCACTCGTGTCGTCCGTTTTAAAATTGAGCCACATCTGATGGCTGGTACTGACCACCAGATCTGGAGTTGTAGTCCCAGACAACACATGAAAGACTGTCCGCTGATCGCCGATTACAGTGCCGTCACCCACAGTTAGAGTATCGTAGCCCCGCTCCAAGTCAAACTCTTCAAAAGTCAGCTTGATCACCTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU263425 lncRNA downstream 145664 4923922 ~ 4945774 (-) False G232147
TU263374 lncRNA downstream 173677 4903066 ~ 4917761 (-) True G232102
TU263348 lncRNA downstream 255329 4835856 ~ 4836109 (-) True G232076
TU263322 lncRNA downstream 318320 4772830 ~ 4773118 (-) True G232051
TU263281 lncRNA downstream 425771 4665428 ~ 4665667 (-) True G232013
TU263426 lncRNA upstream 1925 5110685 ~ 5115725 (-) True G232147
TU263521 lncRNA upstream 34064 5142824 ~ 5153011 (-) True G232236
TU263527 lncRNA upstream 44659 5153419 ~ 5165916 (-) False G232241
TU263534 lncRNA upstream 55166 5163926 ~ 5164299 (-) True G232247
TU263528 lncRNA upstream 56937 5165697 ~ 5169691 (-) True G232241
CI01000054_04671351_04681181.mRNA mRNA downstream 410077 4670974 ~ 4681361 (-) False CI01000054_04671351_04681181
CI01000054_04463229_04486856.mRNA mRNA downstream 604582 4462888 ~ 4486856 (-) True CI01000054_04463229_04486856
CI01000054_04411682_04448848.mRNA mRNA downstream 642590 4411429 ~ 4448848 (-) True CI01000054_04411682_04448848
CI01000054_04264074_04331270.mRNA mRNA downstream 760168 4263862 ~ 4331270 (-) True CI01000054_04264074_04331270
CI01000054_04210959_04214380.mRNA mRNA downstream 877058 4209840 ~ 4214380 (-) True CI01000054_04210959_04214380
CI01000054_05292456_05317677.mRNA mRNA upstream 183539 5292299 ~ 5318991 (-) True CI01000054_05292456_05317677
CI01000054_05341497_05372926.mRNA mRNA upstream 232350 5341110 ~ 5372926 (-) True CI01000054_05341497_05372926
CI01000054_05685529_05686880.mRNA mRNA upstream 576740 5685500 ~ 5687414 (-) True CI01000054_05685529_05686880
CI01000054_05711250_05711861.mRNA mRNA upstream 601862 5710622 ~ 5712639 (-) True CI01000054_05711250_05711861
CI01000054_05822181_05823458.mRNA mRNA upstream 713408 5822168 ~ 5823684 (-) False CI01000054_05822181_05823458
TU263226 other downstream 419205 4672197 ~ 4672233 (-) True G231958
TU263225 other downstream 419205 4672197 ~ 4672233 (-) True G231958
TU262888 other downstream 1108615 3981847 ~ 3982823 (-) True G231645
TU262068 other downstream 2028095 3057648 ~ 3063343 (-) True G230908
TU262065 other downstream 2230865 2854141 ~ 2859545 (-) True G230906
TU263564 other upstream 97439 5206199 ~ 5209240 (-) True G232274
TU265088 other upstream 1519322 6649149 ~ 6654013 (-) True G233619
TU265381 other upstream 2056675 7171325 ~ 7171673 (-) True G233891
TU266788 other upstream 4139279 9248039 ~ 9248538 (-) True G235216
TU266868 other upstream 4374387 9485215 ~ 9485318 (-) False G235290

Expression Profile