RNA id: TU263534


Basic Information

Item Value
RNA id TU263534
length 353
lncRNA type intronic
GC content 0.35
exon number 2
gene id G232247
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 5163926 ~ 5164299 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTGCTAACAGCTATTTTTATGCAGGCAACATGCATACAAGAACAGCTTCTATCTACCTGAATGGAGAAACTTATTTCAAATAAGCAATACAATCAGACACTAAAAATGCATTTGTTCATGCTTGTCCAGCTAATTTTCAATGCTAAAATGAAATAATAAAAATGATATTGGTTCTTGTAATGAAAAGGCGGGAATTTGATTTCTATAACTGCGATATTGGGGACAAGATTTCTCCTATTCATTTTTCCATGAGTGCTCTGCCTCCCCCTCATTCTGTCTCTGATAACATTTCGTAACAAAACAGATAAATATCATGGTAAGTATCACCGGCTTTAGCCAATACATCTTAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263521 lncRNA downstream 10915 5142824 ~ 5153011 (-) True G232236
TU263421 lncRNA downstream 24331 4923922 ~ 5139595 (-) False G232147
TU263528 lncRNA upstream 1398 5165697 ~ 5169691 (-) True G232241
TU263540 lncRNA upstream 8530 5172829 ~ 5176778 (-) True G232251
TU263555 lncRNA upstream 31637 5195936 ~ 5196551 (-) True G232266
TU263566 lncRNA upstream 47579 5211878 ~ 5220496 (-) True G232275
TU263711 lncRNA upstream 193137 5357436 ~ 5358241 (-) False G232406
CI01000054_04671351_04681181.mRNA mRNA downstream 482565 4670974 ~ 4681361 (-) False CI01000054_04671351_04681181
CI01000054_04463229_04486856.mRNA mRNA downstream 677070 4462888 ~ 4486856 (-) True CI01000054_04463229_04486856
CI01000054_04411682_04448848.mRNA mRNA downstream 715078 4411429 ~ 4448848 (-) True CI01000054_04411682_04448848
CI01000054_04264074_04331270.mRNA mRNA downstream 832656 4263862 ~ 4331270 (-) True CI01000054_04264074_04331270
CI01000054_04210959_04214380.mRNA mRNA downstream 949546 4209840 ~ 4214380 (-) True CI01000054_04210959_04214380
CI01000054_05292456_05317677.mRNA mRNA upstream 128000 5292299 ~ 5318991 (-) True CI01000054_05292456_05317677
CI01000054_05341497_05372926.mRNA mRNA upstream 176811 5341110 ~ 5372926 (-) True CI01000054_05341497_05372926
CI01000054_05685529_05686880.mRNA mRNA upstream 521201 5685500 ~ 5687414 (-) True CI01000054_05685529_05686880
CI01000054_05711250_05711861.mRNA mRNA upstream 546323 5710622 ~ 5712639 (-) True CI01000054_05711250_05711861
CI01000054_05822181_05823458.mRNA mRNA upstream 657869 5822168 ~ 5823684 (-) False CI01000054_05822181_05823458
TU263226 other downstream 491693 4672197 ~ 4672233 (-) True G231958
TU263225 other downstream 491693 4672197 ~ 4672233 (-) True G231958
TU262888 other downstream 1181103 3981847 ~ 3982823 (-) True G231645
TU262068 other downstream 2100583 3057648 ~ 3063343 (-) True G230908
TU262065 other downstream 2303353 2854141 ~ 2859545 (-) True G230906
TU263564 other upstream 41900 5206199 ~ 5209240 (-) True G232274
TU265088 other upstream 1463783 6649149 ~ 6654013 (-) True G233619
TU265381 other upstream 2001136 7171325 ~ 7171673 (-) True G233891
TU266788 other upstream 4083740 9248039 ~ 9248538 (-) True G235216
TU266868 other upstream 4318848 9485215 ~ 9485318 (-) False G235290

Expression Profile