RNA id: TU264872


Basic Information

Item Value
RNA id TU264872
length 834
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G233420
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 5750346 ~ 5751278 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTGGTGTTTCTGATGTCACAAACTACCTTGTAGCCAATCACGTCAACGTGTGATCATCAACGAGTGGATCTCTGAGCTGGAGTGAGTGAGTGTAGGTGGAGTAATTTGCATATTTATAAACCGTGAATACTAAATGAGGCAAGGGTGTAGAGCTACATTCAAGCTATTTTAAGGCATGAAGAAATAATTTTTCAAGGAAAAAATGTTTGAATGTGTCATTTTGGTGATCAAAGATGCGTTTTAAGGGATAAAATTCTCGACTACAGGGGAACTTTAATAAAAACTATAACAGTTTAAAAAAAATACTAAAACAACACTGGTGCAAGATAATGTTTTCACAGCTCTTTCCACTCACCTCTGATTGACATTAGATTCCAAGTGTGCAAAGTCCTCAGAAACCTCTTTGGTTGTGTCCAGAAGGCTTTGTACATTGGCAAGGATCCCAGATTGGCTTAGGTCTGAACCAAGCTCGATAAATGATTTTAACTGACTTGACTCTTGGGTAATTTCTGATTTCACCTCCTCTATGGTCTGTCTGTAGTCAACCACACTGCAGTCTGGTTGGCCTACTGGGCTGAGAGCCCTTTCTCGACTCTGCGTGAAGCTGCGGAGGTCTGCGCTCTGGCGCTCAAAGCTCTCCAACTTGGGCAAAAGTCCCCGCAACTCAGTCTCTCTTTTTGCTTGCTTGGCCTGGGCTGCTGTGTAGCGCTGACTCACGTCCTGCAGTGCCCCCTGCAGGCCAGATGCTGTCGATGCATCTGCAGACTTCAGAAGCTTGGACACAGAGTCCAAGGTGGCATCCACGCTTCCCTGCCTCGAAAGAAGCTCCTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264796 lncRNA downstream 275954 5474145 ~ 5474392 (-) True G233356
TU263750 lncRNA downstream 335804 5414224 ~ 5414542 (-) True G232439
TU263748 lncRNA downstream 338231 5411567 ~ 5412115 (-) True G232437
TU263742 lncRNA downstream 341024 5404061 ~ 5409322 (-) True G232432
TU263713 lncRNA downstream 391338 5357863 ~ 5359008 (-) True G232406
TU264840 lncRNA upstream 9021 5760299 ~ 5783273 (-) False G233392
TU264836 lncRNA upstream 31682 5782960 ~ 5852707 (-) False G233392
TU264838 lncRNA upstream 31682 5782960 ~ 5790110 (-) True G233392
TU264830 lncRNA upstream 70199 5821477 ~ 5824126 (-) True G233390
TU264878 lncRNA upstream 529266 6280544 ~ 6286767 (-) True CI01000054_06283619_06286512
CI01000054_05711250_05711861.mRNA mRNA downstream 37707 5710622 ~ 5712639 (-) True CI01000054_05711250_05711861
CI01000054_05685529_05686880.mRNA mRNA downstream 62932 5685500 ~ 5687414 (-) True CI01000054_05685529_05686880
CI01000054_05341497_05372926.mRNA mRNA downstream 377420 5341110 ~ 5372926 (-) True CI01000054_05341497_05372926
CI01000054_05292456_05317677.mRNA mRNA downstream 431355 5292299 ~ 5318991 (-) True CI01000054_05292456_05317677
CI01000054_04671351_04681181.mRNA mRNA downstream 1068985 4670974 ~ 4681361 (-) False CI01000054_04671351_04681181
CI01000054_05822181_05823458.mRNA mRNA upstream 70890 5822168 ~ 5823684 (-) False CI01000054_05822181_05823458
CI01000054_05827691_05828736.mRNA mRNA upstream 76115 5827393 ~ 5830717 (-) True CI01000054_05827691_05828736
CI01000054_05853193_05858118.mRNA mRNA upstream 101797 5853075 ~ 5858118 (-) True CI01000054_05853193_05858118
CI01000054_05956278_05957354.mRNA mRNA upstream 204835 5956113 ~ 5957354 (-) True CI01000054_05956278_05957354
CI01000054_05990266_06191955.mRNA mRNA upstream 238988 5990266 ~ 6191955 (-) True CI01000054_05990266_06191955
TU263564 other downstream 541106 5206199 ~ 5209240 (-) True G232274
TU263226 other downstream 1078113 4672197 ~ 4672233 (-) True G231958
TU263225 other downstream 1078113 4672197 ~ 4672233 (-) True G231958
TU262888 other downstream 1767523 3981847 ~ 3982823 (-) True G231645
TU262068 other downstream 2687003 3057648 ~ 3063343 (-) True G230908
TU265088 other upstream 876804 6649149 ~ 6654013 (-) True G233619
TU265381 other upstream 1414157 7171325 ~ 7171673 (-) True G233891
TU266788 other upstream 3496761 9248039 ~ 9248538 (-) True G235216
TU266868 other upstream 3731869 9485215 ~ 9485318 (-) False G235290
TU266867 other upstream 3732074 9485215 ~ 9485318 (-) False G235290

Expression Profile