RNA id: TU264840



Basic Information


Item Value
RNA id TU264840
length 2128
lncRNA type read_through
GC content 0.51
exon number 4
gene id G233392
representative False

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 5760299 ~ 5852707 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTTTGTGCTGCTGCTCTAGTAGCTCCGGCTGATAACTCTGTACTGAGACCTCAGACAGTCTCTGGGCCACCTCAGCTAGCCAGTTAAGGACTTCCACCTCTTCCTCTCCAAATAGTTGAGCATTGGCCAGGGCCTGCTCCAGCATGGCCTCTCTCCGATCGCACCAATCACGCAGCTCCGTGTGCCCGTTGCGCACTGCCGCCACACGATCGCCCAGCCAATCTCGATCCGCCACACAGCTGAGCGGGTACAATGATTGGCTGAGCGTCTCAAGATGGTCTACATCATTTTCCCGAGAGGACACCTCCTCTTGGACAGCCTGGGATTATAGCCCAGATTAAAGAGGAGACATGATGGGATGAGTCGAAGGAGAAAAAAAGATAAGGCAAACATAAACATACATGACAATACAGAACAATGACAAATCATAATTAACTGATGCAAGCAAAAAATAAAAATGTGAATCAACACAGGATGAGATGGAAACACAACCATAAAAAAAAGAAATCATGATGAAATTAAACTGCAAAATGGAAAGGATGTGGGCAGGATCACAACCAGAGACCTGAAATCCGTGCCTTCTTAGATAACTGCACTCCTACTTGTCCATTTAAAACCACAGGAGACTGACAATCTGTTCTCTCCTCTGCATCTCTAGTCAGTCTAATGATGCTTGACACTTTGAAAATTGCTTGCTAAAATGACAGATCTTGGTTCGGCAGCAACAGTTCCAGCAAACGTATCCTCTGCAAACTGCCAGGACACATCTCTCCCAGGTGTTGCACATACTTTACCTTGTGTCTTACAATCTGCTGTGTGATTTTGGAGGTCTGGGTTCCCATTGGCTCAGCGGAGCTCAAACGTCTCTCTGTTGCGCTCAACCACTCCCCGAGGGGCTCCACGGCCTCATGGAACTGCAGCGCTAACACCTGCAGCTCCTCTAGCTGCCGTTGCCTGAGGACGTGAGGTTAGGAGGAAATCTGTGTTATATGATTATTCTACTCCATTTTATGGCCTTGTAAAGCAACCAAGTGATTGAATTCTGAGTAAGAGATCTGATTAAGAGGTTTTATGGTTGTGTCTGGGTGTCTGTATTGCTCTGATTAAGGAGTTTACCTGGCGCTGGCCTTTTCCAGCAGGTTTGTCCATCTTTCTCCAAGGCTCTTAAGTTGTTTCTGGATTTTGTCTCTGTCTTGTGTCTCAGCCGTAGCAGCGATGCGCTCTCCTTCTGCCCTGATCATCTCCACTGTCCCACGGCGGTCATCCAGTAACCGTTGCAGCAGCTTATAAAAATCTTCTGCTCCTGAATTTGTGCTTTGACCACACGGTACTCAGCGGAGGGAGGTTTTTGATTGACTATGAGCTCTTCTGTGTCACTCAGCCAGCTCAAGAGTGGCTCTAGAGCATCTTGGAACTTCCCACAATGCAACAGGGCCTCCTGCAGCTGTGCGATTCTTTCAGCAACCTCTTGTTGAGGGAGTTCCAGCGCAGGTTGGTGGTCTCCAAGTCATGTTCCAGGGCCTGAGTGTCGGTGTGTTTGGCTGCACTCTGGATGAGACCTTGACCCACAGCGTTGACATGCTGCAGTTTAGGCTGAATGCTGTCAAACTGCTCCCTTTCCACTGCCTACCTTGAATTCTTGAAGCTGCTGTTTAATGACCTCTACTTCTGTCCCCACGACAGCCTGTGTGTTCAGCACTTCCTCTGCCCGTCCCAGCAACCCCTGTAGGTCGGCCAGTCGGGAGTAGAACTCCTTCACACGTTCTTCTGCTGCTTCTATGAGTGCCAGACGGTTCTGGCCCCGCTCTGCCAGCTTGCCTGCCTGTCTGCTCAGGGCTTCGGTTTCTCTCCTGAGGGCCAGAAGATCAGGAGAGCTCCCCTCTCTACGTAGCATAGTTGTGCATTCCCCACCATGACCTTCCAGCTCGGCACGGAGGGCATCAAGTCGGCTCAGGAAGCCTCTGACAGCGTCAGCCTGCGAGGCCAAGGAGTCAGCATCTCGTCCCACAGGGCTAAGGCTGTCCAGCTCATCGTCCAAATCAGCCAGGCGGGAGAAAATGTCTCGAACACGTGACTGGACCTCTCCCACGCCCTGCAACCGGGACTCCAAGGATGAGCAGCATTGCTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU264872 lncRNA downstream 9021 5750346 ~ 5751278 (-) True G233420
TU264796 lncRNA downstream 285907 5474145 ~ 5474392 (-) True G233356
TU263750 lncRNA downstream 345757 5414224 ~ 5414542 (-) True G232439
TU263748 lncRNA downstream 348184 5411567 ~ 5412115 (-) True G232437
TU263742 lncRNA downstream 350977 5404061 ~ 5409322 (-) True G232432
TU264830 lncRNA upstream 38204 5821477 ~ 5824126 (-) True G233390
TU264878 lncRNA upstream 497271 6280544 ~ 6286767 (-) True CI01000054_06283619_06286512
TU264992 lncRNA upstream 534048 6317321 ~ 6325541 (-) True G233539
TU265045 lncRNA upstream 629810 6413083 ~ 6413708 (-) True G233581
TU265049 lncRNA upstream 635332 6418605 ~ 6418858 (-) True G233585
CI01000054_05711250_05711861.mRNA mRNA downstream 47660 5710622 ~ 5712639 (-) True CI01000054_05711250_05711861
CI01000054_05685529_05686880.mRNA mRNA downstream 72885 5685500 ~ 5687414 (-) True CI01000054_05685529_05686880
CI01000054_05341497_05372926.mRNA mRNA downstream 387373 5341110 ~ 5372926 (-) True CI01000054_05341497_05372926
CI01000054_05292456_05317677.mRNA mRNA downstream 441308 5292299 ~ 5318991 (-) True CI01000054_05292456_05317677
CI01000054_04671351_04681181.mRNA mRNA downstream 1078938 4670974 ~ 4681361 (-) False CI01000054_04671351_04681181
CI01000054_05822181_05823458.mRNA mRNA upstream 38895 5822168 ~ 5823684 (-) False CI01000054_05822181_05823458
CI01000054_05827691_05828736.mRNA mRNA upstream 44120 5827393 ~ 5830717 (-) True CI01000054_05827691_05828736
CI01000054_05853193_05858118.mRNA mRNA upstream 69802 5853075 ~ 5858118 (-) True CI01000054_05853193_05858118
CI01000054_05956278_05957354.mRNA mRNA upstream 172840 5956113 ~ 5957354 (-) True CI01000054_05956278_05957354
CI01000054_05990266_06191955.mRNA mRNA upstream 206993 5990266 ~ 6191955 (-) True CI01000054_05990266_06191955
TU263564 other downstream 551059 5206199 ~ 5209240 (-) True G232274
TU263226 other downstream 1088066 4672197 ~ 4672233 (-) True G231958
TU263225 other downstream 1088066 4672197 ~ 4672233 (-) True G231958
TU262888 other downstream 1777476 3981847 ~ 3982823 (-) True G231645
TU262068 other downstream 2696956 3057648 ~ 3063343 (-) True G230908
TU265088 other upstream 844809 6649149 ~ 6654013 (-) True G233619
TU265381 other upstream 1382162 7171325 ~ 7171673 (-) True G233891
TU266788 other upstream 3464766 9248039 ~ 9248538 (-) True G235216
TU266868 other upstream 3699874 9485215 ~ 9485318 (-) False G235290
TU266867 other upstream 3700079 9485215 ~ 9485318 (-) False G235290

Expression Profile