RNA id: TU264838


Basic Information

Item Value
RNA id TU264838
length 4521
lncRNA type antisense_over
GC content 0.47
exon number 11
gene id G233392
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 5760299 ~ 5852707 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAATGCATTTCAAGCTACAAACATATGTAGATGCACTTGTTTTTTATTGGTGCATTCAATCAGATCTCTCTGTATAATGATGTATTAATATCTAGAGCACCTGTTGCAGGGCAGCTTCCAAAAGCTTCTGCCTCTCATCAGTCTTCAGCAGAAGGTTCTTCCAGCTTCGGTTGAGCTCATCCAGCTGGTCTCTCAGGTGGTTGATTTCGTCTCCAGGACTGGACTCCAGCAGCTCTGAGCCCGCTCTGTTCACTGTCTCCACAGTGGACCGATGGGACAGCACATCGTTTCTTAAAACCTACAAAGAGAGCTTGATTAAAGGAATTTGCTTTAAAAATGGAGAGTACATAAAAATAAGGCCCAAAGTGATGTACATGATGCTTAGCCAGCTCAATTTCAATGGCCTTGGGGTCAGAGCTGATGGGTCGCTGGGTGTCCAGTGTGGCATGAGTGTGACTGAGCCAAGACTGCAGCTCAGAGAGAGCATGCTGGAACTGACCTAGAGCCAACAGCGCACCCTCCAGTTTGTGCTGTCTGATTGTGATTTTGTCCACCAGGTTGTCCCACAGGTGGCGTAGCTCAGTGAGAGGCTCTTGAATCATGTCCCGGTCTGTTTGGTCACTCACTTTCCTGAGCAGCAGCTCTCCTTGGTGACAAAGCTTCTCCATGTCAATCTGCTGCTGGTACACCTCCACTTTATATTGCTTGAGCTCCTCTATCTGTTGTTTGACGGTGCTGAGGTCTGTCCCCACAGCTGGCATGTCACACAATTTGATGACAGCATTGTCCAAGTAGTCAAACATGCCCTGAAGAGCATCCTGGTATTGCACAGAGTCAGTCATGGCCTCTTCCAGTCTCTCCATTCTCTCTCTCCACGTGCGGTTCAAGCCTTCCCAGGCGGCATTCATCTCATCAATGGTTTTCTTGACCTCTGGCTTCTCTGTCTCTCCACAGGCAAAGATGAGGTCAGCTCCAAGAGTTCGTACGATCTCCAGTTCCTCCCTCAGCCCATCTGTCTCTGCCTTAATGGCCTCTGCTGCCTCTATTTGTTGTTTTATGAGTGAGGGATCCACCCCCGGGTCCTCCAGCTCTTTCACGATGTCCTGAGAGTCACGGAGTGTGCTCAGCAGAGCGGCCATGTCAGCCCAGAACTTTCCAGCGAGATCTAGAACATCCTGAAGTTTACCTTCTCTTTCCTCCGCCCTCTGCCTGATTTCATCCCACAGAGAGCGCAGCCGCAGGAGTCGTGAACGCACCGCCTGGGCAGCAGGATCATCGTGTGGGGCTCGGCTGATGAGCTCTTCTCCTCGGGCACACAGGGCGCTGAAAGACGGCAGGAGTTTGTCCAGCTCTAGTCCTGTAGCCCGGTGCTCTGCCAGTTGTTCACGGATCTTTTCCACCTCAGCGGCCACTGGAGGGGGCTGCCGTAAGCGCTGAACTGCCCCTTCCAGAGTCTCCAACAGAGGGTCCATCTTATCATGGAACTGAATGGAGAGAAAGATGACGATAATCAAAACAAATACAGCACACAAAAGTAACTGGAGAAGGACCAGGCATAAGGAGGAGGGGAGATTTATCCCAGACACATGCAAAAGGGCAGAGGAAGTTGATGCTAAATAAGAAATACAAGTACTGAAACGTGTATGCTGCTGTTCTTAAAGTGGAAAAAAATGAACTAAATTTTTTTTTGGGTGTAAGGATGGAGGTGTCAAAAATCGCTTATTCTAAGACAAAATCTACAGTATTTCAAGAAACATGCTGTTCAAAAGAGTAAAGGAAGAAGGTTTAAGGTGATATTTGAATAAATTGCACACTATTATATGTAGAATAAGAAACAAAGAATCAAAATGTATATTTTATATTATATCTTCTTGTACTAACAAGATACTGTCTTTGCATCAAAGACAGTAAGGTCAACTGATGTATGCTAAAACTAGTTCATATCACATGTTTGTTTCATCAGAATGATAAAAAGTATTTCGATTTTATTAACAATTACTGAAAATTCCTGATTCCCAATCCAATACACACATTATATCAGTGGTTAAATCAGTGCGTGATGGAGTTCTTACCTCTACCAGCTGAGGGTGTTGCAGAGAGCAGTGATGATGGAGGGATGGACACACACAGCACATCCACAAACATGAGTGATGGGTGGACGGATGGACCAAACGGACATGGGAGGGAGAGGTGGAGGGAATAGGCAAAGGGAGATTTGCAAGCAGGAATGGGGGAAGTTTAGGGGATACAGGACATGGAAAGGAGAGGGTGACAGAATATGGGGCAAAAGGATGGGAAAGTTGGAGTTACAGTATAGTAGAGTTTGAAGGGATGGAGGTGGAGAAACAGTACAATGTGTTAATTCAACAGCATGCAACAAGCCAGCAGGAAGAATCAATAACAAACATTCAGCAAAAATGCAGCTGATGATGTCAGTGATGTTATTTAAAAACAGACTTAGTGTGAAATAATGGGTAATTAAAAGTGATGTGTCACTTAAAATAACTTAAATGAACTTATTTGTGCTGTATAATGCTGAACTGTAACTCTTAAATAAATGACAAGCTGGGCAGCAGTCCAAAGTAAGCATGCTAACATTTTGGAGCAAATACCTGGGCAGACTGTGACACTGCTTCATCCAGTGCTGTGGCTCGACTTTTGACCTCCTCTTTGATGTTGATGTAACGTCTCTCTGCTTCATTATAACGTTGTCTCACTGTTGCTCCTTCCTGGGCACTCAGTTCTGCCAGCTGTGGGCCGATCTTTAGCAGTTTGTCTATGTGTGGCTTGTGCTCAGAGATGGACTCTCTCAGAAGCCTCATCTGGTCTTGCTGTTGTCTGAGTGCGTCTGTGTCAATGGCGGGAAGGGGTAGCTGGGCAATCAGAGTCTCGGTCTCGCCCAGCCAGGGTTCAAGTTCCTCATATGTCTCCCAGAACCGCGCCACCAGCACCTGAGCCTGCTCCAGAGCTGAGAAGCGCTCAGCATGATTCTGATTTACTGCTTCATAACGAGCACTTAAAGAATCTGTCTTCACCTTCAGAGCCTCTCTCTGCTGTTCACTGCAGCTCTCCAGGATGTCCTCTCGTGTCTTAAGAAGTTGGTCCACGGTGTCTTTGTGACGGATGATGTCAATGTTAAAGGCTCTCTGCACCTGGAGCTGTGCCACAGTCACATCGGGCTCCAGACTCAGAGGCCCCAGAGACGCTAACTTCCTCTCTGTCTCACCGACCCAAGTCAGCTCCGCATCGACTGCCTCCTCATACTGCTGTGACCTTTGGATGGCAGCCTGCACTAACTGCACTCTCTGTGTGATGGTCTCATCTGCTTGGCGGTAGCGCTGATTGGCATCAGCGACTAGGCGGTCCAGGCCTTCCCGTGCACGCCAGGGCACTAGATCCAGTAAAGCACTGCCTACCTCATTCACAGTATCCAGAACTAACCTCTTCTCAGCAGACACACACTTCAGCTCCTGAGGCCTCTGTCTGTCCTGATAGGCTGGTGTTGTGTCTGGCTCAACATTGTTAAGCTCTGCCTCCACACTATCCAACCATTGATTGATGTCATCATGTGAGCTAGCAAATCGTGTGGCCAACTGAAGGGCCTGTTCCAGAGTACGGAGGGCCTTGCTGCTGCCCGCTGTCATCTCTGCGTAGCGGCTTTTGATACCATCTAACTTCTCCTGGATCAACAGGACCTCCTCACCTGTCACAGAGATCAAACATGATCACAATCAACGGAGGAATTCAGTAATACACCGATGAACATAGAGACTGGACGGTAAAGTACCAGTGGTTTGTTTAAGCAGAGCCTGTCCATTCTTAATGGCCTGGTCCACTGTCTTCTTCCTGCTGATAATCTCTTCATTAAGAGCCTGTAGGGGACCAGCAGTAGAAACATTAACTCTGGAAATAATTTAAGGGAATTTTATGTAAAGTAAAGTTCAGAATGTAGTCAACAGTATGTCTTTAAATTATTTTCATTTGGGTGCTTTTCTCAGCAAAAATTGGTATTTGCAATTAATTAGATTAATTAATTCATGTAATTTATTTGATTAAAAGCTTTAATTGACTGACAGCCCTAGCGTAACTCTTCTGACAGCTATTTTTTCGGATGAGGGCCGCTCAGCAGTATTCATCTTCTCTAAACTGACTTATACGGTATTGATGGTCCTGGGCTGCTATACCCTGCAAAATCGTACCAGTGTGTGTTTGTGCTGCTGCTCTAGTAGCTCCGGCTGATAACTCTGTACTGAGACCTCAGACAGTCTCTGGGCCACCTCAGCTAGCCAGTTAAGGACTTCCACCTCTTCCTCTCCAAATAGTTGAGCATTGGCCAGGGCCTGCTCCAGCATGGCCTCTCTCCGATCGCACCAATCACGCAGCTCCGTGTGCCCGTTGCGCACTGCCGCCACACGATCGCCCAGCCAATCTCGATCCGCCACACAGCTGAGCGGGTACAATGATTGGCTGAGCGTCTCAAGATGGTCTACATCATTTTCCCGAGAGGACACCTCCTCTTGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264872 lncRNA downstream 31682 5750346 ~ 5751278 (-) True G233420
TU264796 lncRNA downstream 308568 5474145 ~ 5474392 (-) True G233356
TU263750 lncRNA downstream 368418 5414224 ~ 5414542 (-) True G232439
TU263748 lncRNA downstream 370845 5411567 ~ 5412115 (-) True G232437
TU263742 lncRNA downstream 373638 5404061 ~ 5409322 (-) True G232432
TU264830 lncRNA upstream 31367 5821477 ~ 5824126 (-) True G233390
TU264878 lncRNA upstream 490434 6280544 ~ 6286767 (-) True CI01000054_06283619_06286512
TU264992 lncRNA upstream 527211 6317321 ~ 6325541 (-) True G233539
TU265045 lncRNA upstream 622973 6413083 ~ 6413708 (-) True G233581
TU265049 lncRNA upstream 628495 6418605 ~ 6418858 (-) True G233585
CI01000054_05711250_05711861.mRNA mRNA downstream 70321 5710622 ~ 5712639 (-) True CI01000054_05711250_05711861
CI01000054_05685529_05686880.mRNA mRNA downstream 95546 5685500 ~ 5687414 (-) True CI01000054_05685529_05686880
CI01000054_05341497_05372926.mRNA mRNA downstream 410034 5341110 ~ 5372926 (-) True CI01000054_05341497_05372926
CI01000054_05292456_05317677.mRNA mRNA downstream 463969 5292299 ~ 5318991 (-) True CI01000054_05292456_05317677
CI01000054_04671351_04681181.mRNA mRNA downstream 1101599 4670974 ~ 4681361 (-) False CI01000054_04671351_04681181
CI01000054_05822181_05823458.mRNA mRNA upstream 32058 5822168 ~ 5823684 (-) False CI01000054_05822181_05823458
CI01000054_05827691_05828736.mRNA mRNA upstream 37283 5827393 ~ 5830717 (-) True CI01000054_05827691_05828736
CI01000054_05853193_05858118.mRNA mRNA upstream 62965 5853075 ~ 5858118 (-) True CI01000054_05853193_05858118
CI01000054_05956278_05957354.mRNA mRNA upstream 166003 5956113 ~ 5957354 (-) True CI01000054_05956278_05957354
CI01000054_05990266_06191955.mRNA mRNA upstream 200156 5990266 ~ 6191955 (-) True CI01000054_05990266_06191955
TU263564 other downstream 573720 5206199 ~ 5209240 (-) True G232274
TU263226 other downstream 1110727 4672197 ~ 4672233 (-) True G231958
TU263225 other downstream 1110727 4672197 ~ 4672233 (-) True G231958
TU262888 other downstream 1800137 3981847 ~ 3982823 (-) True G231645
TU262068 other downstream 2719617 3057648 ~ 3063343 (-) True G230908
TU265088 other upstream 837972 6649149 ~ 6654013 (-) True G233619
TU265381 other upstream 1375325 7171325 ~ 7171673 (-) True G233891
TU266788 other upstream 3457929 9248039 ~ 9248538 (-) True G235216
TU266868 other upstream 3693037 9485215 ~ 9485318 (-) False G235290
TU266867 other upstream 3693242 9485215 ~ 9485318 (-) False G235290

Expression Profile