RNA id: TU263839


Basic Information

Item Value
RNA id TU263839
length 447
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G232519
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 5838283 ~ 5838874 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTGTGATCATGTGCCTTTGTTTTGATGCTGTGAGCATGCTGTGTGGACAGGAGAGGAAAATCACACAAAGTCCTATGACTGGCTATAAGGTCAAAAGGTGGATAAAATGATTAACAGACAGATTGCACTAGCAAGGCAGCTGTGTCCATAATACCGCAGCACTGGAGTAATTATTACCAATGCCTTTGGCTCTGGTTTACCGTAAAATCACACTATAAGGTGATACTTCCATCATGGGATTTGCCGAGCACTCGATTTTCAAGCACTACACAGTCTCTGCCAGAGAAACCTGCAGAACCAATCTCTTCAGCTGTGGTAGATGAACCAGAAGGTGAATATCTGAATTGTTTTTTCAGAAATTCCAAACCCAGTTTTCCTGTTTCCAGTAATATCAATATCCGTGGCCCTCCTGTGGTGCAGCAGTCCTGTTTGGCCTCAACAGTTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263823 lncRNA upstream 137032 5694337 ~ 5696013 (+) True G232503
TU263819 lncRNA upstream 155722 5627572 ~ 5627795 (+) True G232499
TU263779 lncRNA upstream 363950 5474045 ~ 5474333 (+) True G232467
TU263754 lncRNA upstream 419414 5418632 ~ 5418869 (+) True G232443
TU263682 lncRNA upstream 437171 5400368 ~ 5401112 (+) True G232379
TU263841 lncRNA downstream 20746 5859620 ~ 5859877 (+) True G232521
TU263846 lncRNA downstream 27993 5866867 ~ 5867089 (+) True G232526
TU263850 lncRNA downstream 31324 5870198 ~ 5870423 (+) True G232530
TU263852 lncRNA downstream 33499 5872373 ~ 5872855 (+) True G232532
TU263859 lncRNA downstream 50920 5889794 ~ 5890005 (+) True G232539
CI01000054_05830867_05831873.mRNA mRNA upstream 6330 5830809 ~ 5831953 (+) True CI01000054_05830867_05831873
CI01000054_05825039_05827325.mRNA mRNA upstream 10905 5823806 ~ 5827378 (+) True CI01000054_05825039_05827325
CI01000054_05813838_05819498.mRNA mRNA upstream 18543 5812764 ~ 5819740 (+) True CI01000054_05813838_05819498
CI01000054_05772612_05808901.mRNA mRNA upstream 28917 5772452 ~ 5809366 (+) True CI01000054_05772612_05808901
CI01000054_05713420_05771550.mRNA mRNA upstream 66538 5713420 ~ 5771745 (+) True CI01000054_05713420_05771550
CI01000054_05841632_05851621.mRNA mRNA downstream 2622 5841496 ~ 5852527 (+) True CI01000054_05841632_05851621
CI01000054_05875546_05877938.mRNA mRNA downstream 36605 5875479 ~ 5878322 (+) True CI01000054_05875546_05877938
CI01000054_05926683_05953807.mRNA mRNA downstream 87809 5926683 ~ 5953955 (+) True CI01000054_05926683_05953807
CI01000054_05957906_05981499.mRNA mRNA downstream 118525 5957399 ~ 5982222 (+) True CI01000054_05957906_05981499
CI01000054_05989042_05989389.mRNA mRNA downstream 150168 5989042 ~ 5989795 (+) True CI01000054_05989042_05989389
TU263797 other upstream 213608 5623015 ~ 5623101 (+) True G232485
TU263121 other upstream 1387553 4407152 ~ 4450730 (+) True G231863
TU262576 other upstream 1924737 3908451 ~ 3913546 (+) True CI01000054_03848427_03914231
TU261835 other upstream 2750891 3078502 ~ 3087392 (+) True G230689
TU261855 other upstream 3533901 2289831 ~ 2304382 (+) True CI01000054_02289802_02330591
TU263881 other downstream 154786 5993660 ~ 6041863 (+) True G232558
TU263932 other downstream 465433 6304307 ~ 6304441 (+) True G232608
TU264006 other downstream 535976 6374850 ~ 6375894 (+) True G232659
TU264264 other downstream 1049038 6887912 ~ 6888503 (+) False G232870
TU264265 other downstream 1049240 6888114 ~ 6888503 (+) True G232870

Expression Profile