RNA id: TU263846


Basic Information

Item Value
RNA id TU263846
length 223
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G232526
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 5866867 ~ 5867089 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTATTTCCCTATAGCAGCTAATAAATCAGAAGTCTCACACATTTAGAAAAAACACCTTATTTCCGCATTGAAAAATAAGGTAAGGATAGACTAAACATGTAATACGCATGTGCATGCCGTCACCGTTTTCACAGATTCGCATTTTTGCAGTTTACACAGAGATGATAACAGTGTCTTTTTCAAAAACTTTCACTTTGAAACTCGCAAGAGTTCGCATTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263841 lncRNA upstream 6990 5859620 ~ 5859877 (+) True G232521
TU263839 lncRNA upstream 27993 5838283 ~ 5838874 (+) True G232519
TU263823 lncRNA upstream 165616 5694337 ~ 5696013 (+) True G232503
TU263819 lncRNA upstream 184306 5627572 ~ 5627795 (+) True G232499
TU263779 lncRNA upstream 392534 5474045 ~ 5474333 (+) True G232467
TU263850 lncRNA downstream 3109 5870198 ~ 5870423 (+) True G232530
TU263852 lncRNA downstream 5284 5872373 ~ 5872855 (+) True G232532
TU263859 lncRNA downstream 22705 5889794 ~ 5890005 (+) True G232539
TU263865 lncRNA downstream 27659 5894748 ~ 5894967 (+) True G232545
TU263821 lncRNA downstream 50970 5918059 ~ 6346633 (+) True G232501
CI01000054_05841632_05851621.mRNA mRNA upstream 14340 5841496 ~ 5852527 (+) True CI01000054_05841632_05851621
CI01000054_05830867_05831873.mRNA mRNA upstream 34914 5830809 ~ 5831953 (+) True CI01000054_05830867_05831873
CI01000054_05825039_05827325.mRNA mRNA upstream 39489 5823806 ~ 5827378 (+) True CI01000054_05825039_05827325
CI01000054_05813838_05819498.mRNA mRNA upstream 47127 5812764 ~ 5819740 (+) True CI01000054_05813838_05819498
CI01000054_05772612_05808901.mRNA mRNA upstream 57501 5772452 ~ 5809366 (+) True CI01000054_05772612_05808901
CI01000054_05875546_05877938.mRNA mRNA downstream 8390 5875479 ~ 5878322 (+) True CI01000054_05875546_05877938
CI01000054_05926683_05953807.mRNA mRNA downstream 59594 5926683 ~ 5953955 (+) True CI01000054_05926683_05953807
CI01000054_05957906_05981499.mRNA mRNA downstream 90310 5957399 ~ 5982222 (+) True CI01000054_05957906_05981499
CI01000054_05989042_05989389.mRNA mRNA downstream 121953 5989042 ~ 5989795 (+) True CI01000054_05989042_05989389
CI01000054_06292147_06297237.mRNA mRNA downstream 424887 6291976 ~ 6297560 (+) True CI01000054_06292147_06297237
TU263797 other upstream 242192 5623015 ~ 5623101 (+) True G232485
TU263121 other upstream 1416137 4407152 ~ 4450730 (+) True G231863
TU262576 other upstream 1953321 3908451 ~ 3913546 (+) True CI01000054_03848427_03914231
TU261835 other upstream 2779475 3078502 ~ 3087392 (+) True G230689
TU261855 other upstream 3562485 2289831 ~ 2304382 (+) True CI01000054_02289802_02330591
TU263881 other downstream 126571 5993660 ~ 6041863 (+) True G232558
TU263932 other downstream 437218 6304307 ~ 6304441 (+) True G232608
TU264006 other downstream 507761 6374850 ~ 6375894 (+) True G232659
TU264264 other downstream 1020823 6887912 ~ 6888503 (+) False G232870
TU264265 other downstream 1021025 6888114 ~ 6888503 (+) True G232870

Expression Profile