RNA id: TU263859


Basic Information

Item Value
RNA id TU263859
length 212
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G232539
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 5889794 ~ 5890005 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTGCAGTATAGGAATGTCTCCATAAACAATAAAATAAATACAATACTACAAAGCACATAAAGCTTTATCCTTACAAAGCCTGTTGTGATTTGAAACCTTCATCTTACGTTAGTGTCTGTCTGTCTTAAAATTCTCTTTGCTGCAGACGTGCTTTAAATACTTGAAAGGGAAAGAAGATTATCACTGAGCCCTCTGGTTATGAAGATCCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263852 lncRNA upstream 16939 5872373 ~ 5872855 (+) True G232532
TU263850 lncRNA upstream 19371 5870198 ~ 5870423 (+) True G232530
TU263846 lncRNA upstream 22705 5866867 ~ 5867089 (+) True G232526
TU263841 lncRNA upstream 29917 5859620 ~ 5859877 (+) True G232521
TU263839 lncRNA upstream 50920 5838283 ~ 5838874 (+) True G232519
TU263865 lncRNA downstream 4743 5894748 ~ 5894967 (+) True G232545
TU263821 lncRNA downstream 28054 5918059 ~ 6346633 (+) True G232501
TU263930 lncRNA downstream 244512 6134517 ~ 6136029 (+) True G232606
TU263987 lncRNA downstream 396260 6286265 ~ 6287079 (+) True G232648
TU264012 lncRNA downstream 525658 6415663 ~ 6416211 (+) True G232664
CI01000054_05875546_05877938.mRNA mRNA upstream 11472 5875479 ~ 5878322 (+) True CI01000054_05875546_05877938
CI01000054_05841632_05851621.mRNA mRNA upstream 37267 5841496 ~ 5852527 (+) True CI01000054_05841632_05851621
CI01000054_05830867_05831873.mRNA mRNA upstream 57841 5830809 ~ 5831953 (+) True CI01000054_05830867_05831873
CI01000054_05825039_05827325.mRNA mRNA upstream 62416 5823806 ~ 5827378 (+) True CI01000054_05825039_05827325
CI01000054_05813838_05819498.mRNA mRNA upstream 70054 5812764 ~ 5819740 (+) True CI01000054_05813838_05819498
CI01000054_05926683_05953807.mRNA mRNA downstream 36678 5926683 ~ 5953955 (+) True CI01000054_05926683_05953807
CI01000054_05957906_05981499.mRNA mRNA downstream 67394 5957399 ~ 5982222 (+) True CI01000054_05957906_05981499
CI01000054_05989042_05989389.mRNA mRNA downstream 99037 5989042 ~ 5989795 (+) True CI01000054_05989042_05989389
CI01000054_06292147_06297237.mRNA mRNA downstream 401971 6291976 ~ 6297560 (+) True CI01000054_06292147_06297237
CI01000054_06305908_06312122.mRNA mRNA downstream 415903 6305908 ~ 6312163 (+) False CI01000054_06305908_06312122
TU263797 other upstream 265119 5623015 ~ 5623101 (+) True G232485
TU263121 other upstream 1439064 4407152 ~ 4450730 (+) True G231863
TU262576 other upstream 1976248 3908451 ~ 3913546 (+) True CI01000054_03848427_03914231
TU261835 other upstream 2802402 3078502 ~ 3087392 (+) True G230689
TU261855 other upstream 3585412 2289831 ~ 2304382 (+) True CI01000054_02289802_02330591
TU263881 other downstream 103655 5993660 ~ 6041863 (+) True G232558
TU263932 other downstream 414302 6304307 ~ 6304441 (+) True G232608
TU264006 other downstream 484845 6374850 ~ 6375894 (+) True G232659
TU264264 other downstream 997907 6887912 ~ 6888503 (+) False G232870
TU264265 other downstream 998109 6888114 ~ 6888503 (+) True G232870

Expression Profile