RNA id: TU265049


Basic Information

Item Value
RNA id TU265049
length 254
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G233585
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 6418605 ~ 6418858 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAATGCCACTTGGTTTTATTTCCTGACAAGATTTTAATGACAGCTTTGTTTCTTAACGAGATTTTAATGACAGTCAGCTTTGTTTCTTAACGAGATTTTAATGACAGTTGGTTTTGTTCAGTCAGAAGATTTCAATGATGGTCGGTTTTGTTTGGTTACGAGATCTCAATGGCAGTCGGTTTTCAGTGTCAGTCGCTTTTGTTCTTTTGCAAGATTTCAAAAACAGTTGATCTTGTTTCTTTACGAGATTTCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265045 lncRNA downstream 4897 6413083 ~ 6413708 (-) True G233581
TU264992 lncRNA downstream 93064 6317321 ~ 6325541 (-) True G233539
TU264878 lncRNA downstream 131838 6280544 ~ 6286767 (-) True CI01000054_06283619_06286512
TU264836 lncRNA downstream 565898 5782960 ~ 5852707 (-) False G233392
TU265059 lncRNA upstream 3923 6422781 ~ 6423081 (-) True G233590
TU265055 lncRNA upstream 15890 6434748 ~ 6436431 (-) True G233588
TU265061 lncRNA upstream 18844 6437702 ~ 6437903 (-) True G233592
TU265062 lncRNA upstream 19736 6438594 ~ 6438880 (-) True G233593
TU265063 lncRNA upstream 22247 6441105 ~ 6441497 (-) True G233594
CI01000054_06321499_06337371.mRNA mRNA downstream 80838 6321269 ~ 6337767 (-) True CI01000054_06321499_06337371
CI01000054_06283619_06286512.mRNA mRNA downstream 131929 6283319 ~ 6286676 (-) False CI01000054_06283619_06286512
CI01000054_06242813_06258348.mRNA mRNA downstream 160257 6242741 ~ 6258348 (-) True CI01000054_06242813_06258348
CI01000054_06222549_06234979.mRNA mRNA downstream 183533 6222467 ~ 6235072 (-) True CI01000054_06222549_06234979
CI01000054_06210877_06211356.mRNA mRNA downstream 207130 6210807 ~ 6211475 (-) True CI01000054_06210877_06211356
CI01000054_06422150_06433402.mRNA mRNA upstream 2950 6421808 ~ 6433689 (-) True CI01000054_06422150_06433402
CI01000054_06469564_06492881.mRNA mRNA upstream 49994 6468852 ~ 6492881 (-) True CI01000054_06469564_06492881
CI01000054_06503408_06508723.mRNA mRNA upstream 84375 6503233 ~ 6510068 (-) True CI01000054_06503408_06508723
CI01000054_06629482_06641861.mRNA mRNA upstream 210447 6629305 ~ 6642160 (-) False CI01000054_06629482_06641861
CI01000054_06830485_06831336.mRNA mRNA upstream 410134 6828992 ~ 6831336 (-) True CI01000054_06830485_06831336
TU263564 other downstream 1209365 5206199 ~ 5209240 (-) True G232274
TU263226 other downstream 1746372 4672197 ~ 4672233 (-) True G231958
TU263225 other downstream 1746372 4672197 ~ 4672233 (-) True G231958
TU262888 other downstream 2435782 3981847 ~ 3982823 (-) True G231645
TU262068 other downstream 3355262 3057648 ~ 3063343 (-) True G230908
TU265088 other upstream 209224 6649149 ~ 6654013 (-) True G233619
TU265381 other upstream 746577 7171325 ~ 7171673 (-) True G233891
TU266788 other upstream 2829181 9248039 ~ 9248538 (-) True G235216
TU266868 other upstream 3064289 9485215 ~ 9485318 (-) False G235290
TU266867 other upstream 3064494 9485215 ~ 9485318 (-) False G235290

Expression Profile