RNA id: TCONS_00001322


Basic Information

Item Value
RNA id TCONS_00001322
length 544
lncRNA type retained_intron
GC content 0.40
exon number 2
gene id XLOC_000828
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 57981823 ~ 57991025 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTCACTGTAAACATCAGAGATCTGACAGAGGAGGATTCTGGGATATACTGGTGTGGAGCTGCAGAGAAACAAGCACAAGAGTACACATGGATTTCAGCCATAGATCTGCACATTACTGAACCCACATCAGCGCCAAGACTTCCTAAAAATACCTCAACTGCTTCATTTCACACCAGCAAACCAGCAGATCCTGCATCCAGCAGACCCGTCACACCTTCATCATCTGCATCATCATCGTCAatatcaatgtttttaaatgcatccACCAATGCAGCATCATCACACACACCATTAggtaatatttatttagttttttccctCAGAAATAGGTCATATTATGCTGATTTCATTGTCTGCTTCTTAAGGGTTTACAGCATTCATCATGCTGATGGTCGTAGTGATGCTGACGGTGTTTGGACTCTCGTTGTTCCTGTACCTCAagagaaaacaaaagaaaaaaggtaACTTTCTTActtaaaccttttattttctcATTTACCATAGTAAAGCTGGACTTTAGTGTCAAAACACAGGTCTGATTAG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-120215-211 Predicted to enable transmembrane signaling receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to several human genes including CD300H (CD300H molecule (gene/pseudogene)); CD300A (CD300a molecule); and CD300C (CD300c molecule).

Ensembl:

ensembl_id ENSDART00000151570

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003263 lncRNA upstream 52382 57926893 ~ 57931592 (+) False XLOC_000826
TCONS_00001318 lncRNA upstream 52382 57927489 ~ 57931592 (+) False XLOC_000826
TCONS_00003264 lncRNA upstream 52382 57927580 ~ 57931592 (+) False XLOC_000826
TCONS_00001319 lncRNA upstream 52382 57927974 ~ 57931592 (+) True XLOC_000826
TCONS_00002890 lncRNA upstream 241538 57742079 ~ 57742436 (+) True XLOC_000822
TCONS_00001323 lncRNA downstream 18727 58003615 ~ 58017364 (+) True XLOC_000829
TCONS_00003265 lncRNA downstream 541503 58526391 ~ 58530485 (+) True XLOC_000862
TCONS_00003266 lncRNA downstream 593031 58577919 ~ 58585132 (+) True XLOC_000864
TCONS_00003267 lncRNA downstream 601465 58586353 ~ 58588475 (+) False XLOC_000865
TCONS_00003268 lncRNA downstream 603332 58588220 ~ 58595767 (+) True XLOC_000865
TCONS_00001320 mRNA upstream 3913 57966831 ~ 57980061 (+) True XLOC_000827
TCONS_00001317 mRNA upstream 190245 57787642 ~ 57793729 (+) True XLOC_000825
TCONS_00001316 mRNA upstream 204126 57774454 ~ 57779848 (+) True XLOC_000824
TCONS_00001314 mRNA upstream 220626 57757456 ~ 57763348 (+) False XLOC_000820
TCONS_00001315 mRNA upstream 220798 57761632 ~ 57763176 (+) True XLOC_000820
TCONS_00001324 mRNA downstream 54663 58039551 ~ 58049515 (+) True XLOC_000830
TCONS_00001325 mRNA downstream 81221 58066109 ~ 58076716 (+) False XLOC_000831
TCONS_00001326 mRNA downstream 82927 58067815 ~ 58070078 (+) True XLOC_000831
TCONS_00001327 mRNA downstream 94165 58079053 ~ 58088949 (+) True XLOC_000832
TCONS_00001328 mRNA downstream 106771 58091659 ~ 58102982 (+) False XLOC_000833
TCONS_00001304 other upstream 628941 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001233 other upstream 2686723 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001221 other upstream 2855395 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001186 other upstream 3797818 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001180 other upstream 3922764 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001335 other downstream 175263 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001394 other downstream 1146404 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

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