RNA id: TU264102


Basic Information

Item Value
RNA id TU264102
length 292
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G232739
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 6592934 ~ 6593225 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCGAACTTAAAGGAAGATGTCATGTAAATTTCTTTGTCTGACTGTCTAGTGATATTTATCTTTATATAAATATTTTTGAGAAGCTAGACATGTTGGTTAAGAATATAATTTCTGCCGTATATGCTAAAAATCCTCATATGAAAATAGACACATGACACATGCACATGTAGCATCAACTCCACTTCATTAGGTTTCACACACACAAACACACATACACACATACACAAACTACTTCTGTCATCTTGTCTGGTATCTGTCAGTCACACGTTAGACAACGGTGGCGCCCTTAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264099 lncRNA upstream 6222 6586285 ~ 6586712 (+) True G232736
TU264098 lncRNA upstream 9013 6583631 ~ 6583921 (+) True G232735
TU264091 lncRNA upstream 37295 6555408 ~ 6555639 (+) True G232728
TU264084 lncRNA upstream 54727 6537979 ~ 6538207 (+) True G232721
TU264082 lncRNA upstream 59704 6533021 ~ 6533230 (+) True G232719
TU264103 lncRNA downstream 58 6593283 ~ 6593490 (+) True G232740
TU264115 lncRNA downstream 22461 6615686 ~ 6615908 (+) True G232752
TU264118 lncRNA downstream 25353 6618578 ~ 6618811 (+) True G232755
TU264119 lncRNA downstream 28162 6621387 ~ 6621623 (+) True G232756
TU264121 lncRNA downstream 29690 6622915 ~ 6623217 (+) True G232758
CI01000054_06437628_06441214.mRNA mRNA upstream 151453 6437628 ~ 6441481 (+) True CI01000054_06437628_06441214
CI01000054_06434217_06435680.mRNA mRNA upstream 157254 6433756 ~ 6435680 (+) True CI01000054_06434217_06435680
CI01000054_06411594_06411984.mRNA mRNA upstream 180413 6411594 ~ 6412521 (+) True CI01000054_06411594_06411984
CI01000054_06305908_06312122.mRNA mRNA upstream 280771 6305908 ~ 6312163 (+) False CI01000054_06305908_06312122
CI01000054_06292147_06297237.mRNA mRNA upstream 295374 6291976 ~ 6297560 (+) True CI01000054_06292147_06297237
CI01000054_06756071_06757443.mRNA mRNA downstream 162584 6755809 ~ 6757514 (+) True CI01000054_06756071_06757443
CI01000054_06759472_06761310.mRNA mRNA downstream 165586 6758811 ~ 6761310 (+) True CI01000054_06759472_06761310
CI01000054_06789505_06789810.mRNA mRNA downstream 195137 6788362 ~ 6789946 (+) True CI01000054_06789505_06789810
CI01000054_06795526_06796596.mRNA mRNA downstream 202301 6795526 ~ 6796644 (+) True CI01000054_06795526_06796596
CI01000054_06865381_06869404.mRNA mRNA downstream 272156 6865381 ~ 6869942 (+) True CI01000054_06865381_06869404
TU264006 other upstream 217040 6374850 ~ 6375894 (+) True G232659
TU263932 other upstream 286074 6304307 ~ 6304441 (+) True G232608
TU263881 other upstream 551071 5993660 ~ 6041863 (+) True G232558
TU263797 other upstream 968259 5623015 ~ 5623101 (+) True G232485
TU263121 other upstream 2142204 4407152 ~ 4450730 (+) True G231863
TU264264 other downstream 294687 6887912 ~ 6888503 (+) False G232870
TU264265 other downstream 294889 6888114 ~ 6888503 (+) True G232870
TU264435 other downstream 974298 7567523 ~ 7609893 (+) True G233024
TU264744 other downstream 1711374 8304599 ~ 8304949 (+) True G233306
TU264679 other downstream 1712712 8305937 ~ 8306053 (+) True G233242

Expression Profile