RNA id: TU265159


Basic Information

Item Value
RNA id TU265159
length 226
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G233685
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 6619674 ~ 6619899 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGACAACCCAGAAAAACGTGCATCACAAACGCTTCACATAAATGCATTTGCAACACTTTAAATGTCCAGTGAGTGGCGCTAAAAGCGTTTTTATCCTAAACAGATGATGAACGTGAATCTGGTAACGTTGGCTGTTGTTCGGGAATGAAATGTCCGGTGAGTGCAGCTAAAAGTTTAATGCTAATTTGAAAATAACTACCACCAACACTAAACACTATACCCTAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265152 lncRNA downstream 10810 6608508 ~ 6608864 (-) True G233678
TU265151 lncRNA downstream 11591 6607832 ~ 6608083 (-) True G233677
TU265041 lncRNA downstream 95694 6513490 ~ 6523980 (-) True G233577
TU265077 lncRNA downstream 161278 6458178 ~ 6458396 (-) True G233608
TU265070 lncRNA downstream 168774 6450682 ~ 6450900 (-) True G233601
TU265163 lncRNA upstream 4922 6624821 ~ 6625104 (-) True G233689
TU265161 lncRNA upstream 5889 6625788 ~ 6625906 (-) True G233687
TU265168 lncRNA upstream 40641 6660540 ~ 6660745 (-) True G233694
TU265178 lncRNA upstream 51453 6671352 ~ 6671552 (-) True G233704
TU265183 lncRNA upstream 61580 6681479 ~ 6681940 (-) True G233709
CI01000054_06503408_06508723.mRNA mRNA downstream 109606 6503233 ~ 6510068 (-) True CI01000054_06503408_06508723
CI01000054_06469564_06492881.mRNA mRNA downstream 126793 6468852 ~ 6492881 (-) True CI01000054_06469564_06492881
CI01000054_06422150_06433402.mRNA mRNA downstream 185985 6421808 ~ 6433689 (-) True CI01000054_06422150_06433402
CI01000054_06321499_06337371.mRNA mRNA downstream 281907 6321269 ~ 6337767 (-) True CI01000054_06321499_06337371
CI01000054_06283619_06286512.mRNA mRNA downstream 332998 6283319 ~ 6286676 (-) False CI01000054_06283619_06286512
CI01000054_06629482_06641861.mRNA mRNA upstream 9406 6629305 ~ 6642160 (-) False CI01000054_06629482_06641861
CI01000054_06830485_06831336.mRNA mRNA upstream 209093 6828992 ~ 6831336 (-) True CI01000054_06830485_06831336
CI01000054_06835747_06861855.mRNA mRNA upstream 214521 6834420 ~ 6863079 (-) True CI01000054_06835747_06861855
CI01000054_06874039_06875193.mRNA mRNA upstream 253421 6873320 ~ 6875309 (-) True CI01000054_06874039_06875193
CI01000054_06895032_06942103.mRNA mRNA upstream 274929 6894828 ~ 6942362 (-) True CI01000054_06895032_06942103
TU263564 other downstream 1410434 5206199 ~ 5209240 (-) True G232274
TU263226 other downstream 1947441 4672197 ~ 4672233 (-) True G231958
TU263225 other downstream 1947441 4672197 ~ 4672233 (-) True G231958
TU262888 other downstream 2636851 3981847 ~ 3982823 (-) True G231645
TU262068 other downstream 3556331 3057648 ~ 3063343 (-) True G230908
TU265088 other upstream 8183 6649149 ~ 6654013 (-) True G233619
TU265381 other upstream 545536 7171325 ~ 7171673 (-) True G233891
TU266788 other upstream 2628140 9248039 ~ 9248538 (-) True G235216
TU266868 other upstream 2863248 9485215 ~ 9485318 (-) False G235290
TU266867 other upstream 2863453 9485215 ~ 9485318 (-) False G235290

Expression Profile