RNA id: TU264124


Basic Information

Item Value
RNA id TU264124
length 303
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G232761
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 6625383 ~ 6625685 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCAGTCCATTTGTCACCCAAAGCTACAGCGCCATAGAACGCAAACGCCTGGCAGGCTCTGCTAAGGTCACGGTAAACGCCGCCTCAGTAGCACCTGATTAATTCCAATGTAAAGGCGTGGAAATAAAATTCAATTGATCATTTCCAATTAGCCAGGATCTCTGGGATGACAAGGCAGCCAAGGTCGTGGAACCTTTTGTAGAGCACGTTAATTACAGCGCACCATGTAAGGACTTCTTGAGATCTTATAACAGGCAGCGTGTCAGAAATCGATACAAATGTTGCAGGAAATGTACCATAGATC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264123 lncRNA upstream 318 6624836 ~ 6625065 (+) True G232760
TU264121 lncRNA upstream 2166 6622915 ~ 6623217 (+) True G232758
TU264119 lncRNA upstream 3760 6621387 ~ 6621623 (+) True G232756
TU264118 lncRNA upstream 6572 6618578 ~ 6618811 (+) True G232755
TU264115 lncRNA upstream 9475 6615686 ~ 6615908 (+) True G232752
TU264125 lncRNA downstream 229 6625914 ~ 6626226 (+) True G232762
TU264042 lncRNA downstream 2608 6628293 ~ 6629575 (+) True G232694
TU264158 lncRNA downstream 53253 6678938 ~ 6679176 (+) True G232788
TU264162 lncRNA downstream 60521 6686206 ~ 6686781 (+) True G232792
TU264164 lncRNA downstream 82940 6708625 ~ 6708970 (+) True G232794
CI01000054_06437628_06441214.mRNA mRNA upstream 183902 6437628 ~ 6441481 (+) True CI01000054_06437628_06441214
CI01000054_06434217_06435680.mRNA mRNA upstream 189703 6433756 ~ 6435680 (+) True CI01000054_06434217_06435680
CI01000054_06411594_06411984.mRNA mRNA upstream 212862 6411594 ~ 6412521 (+) True CI01000054_06411594_06411984
CI01000054_06305908_06312122.mRNA mRNA upstream 313220 6305908 ~ 6312163 (+) False CI01000054_06305908_06312122
CI01000054_06292147_06297237.mRNA mRNA upstream 327823 6291976 ~ 6297560 (+) True CI01000054_06292147_06297237
CI01000054_06756071_06757443.mRNA mRNA downstream 130124 6755809 ~ 6757514 (+) True CI01000054_06756071_06757443
CI01000054_06759472_06761310.mRNA mRNA downstream 133126 6758811 ~ 6761310 (+) True CI01000054_06759472_06761310
CI01000054_06789505_06789810.mRNA mRNA downstream 162677 6788362 ~ 6789946 (+) True CI01000054_06789505_06789810
CI01000054_06795526_06796596.mRNA mRNA downstream 169841 6795526 ~ 6796644 (+) True CI01000054_06795526_06796596
CI01000054_06865381_06869404.mRNA mRNA downstream 239696 6865381 ~ 6869942 (+) True CI01000054_06865381_06869404
TU264006 other upstream 249489 6374850 ~ 6375894 (+) True G232659
TU263932 other upstream 318523 6304307 ~ 6304441 (+) True G232608
TU263881 other upstream 583520 5993660 ~ 6041863 (+) True G232558
TU263797 other upstream 1000708 5623015 ~ 5623101 (+) True G232485
TU263121 other upstream 2174653 4407152 ~ 4450730 (+) True G231863
TU264264 other downstream 262227 6887912 ~ 6888503 (+) False G232870
TU264265 other downstream 262429 6888114 ~ 6888503 (+) True G232870
TU264435 other downstream 941838 7567523 ~ 7609893 (+) True G233024
TU264744 other downstream 1678914 8304599 ~ 8304949 (+) True G233306
TU264679 other downstream 1680252 8305937 ~ 8306053 (+) True G233242

Expression Profile