RNA id: TU264170



Basic Information


Item Value
RNA id TU264170
length 307
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G232800
representative True

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 6724842 ~ 6725148 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTGCTTTCTTCTATTGTTCATATATAGTGGCTCATGTTTGGCACTTGTAAGTCATTGCATTCAAAACAAAATAACACAACAAGTGGCATTTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGTCATTAATTACTCACCCTCATGTCGTTCCACACCCGTAAGACATTCATTCATCTTCAGAACACAAATTAAGATATTTTTGATGAAATCCGAGAGCTCTCTGACTTCTTCATAGAAAGCAATTTAACCACCACTTTCAAGGTCCAGAAAGGTACTAAAGACATCGTTAAAATAGTCATCGTGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU264164 lncRNA upstream 15872 6708625 ~ 6708970 (+) True G232794
TU264162 lncRNA upstream 38061 6686206 ~ 6686781 (+) True G232792
TU264158 lncRNA upstream 45666 6678938 ~ 6679176 (+) True G232788
TU264042 lncRNA upstream 95267 6628293 ~ 6629575 (+) True G232694
TU264125 lncRNA upstream 98616 6625914 ~ 6626226 (+) True G232762
TU264175 lncRNA downstream 9915 6735063 ~ 6735372 (+) True G232805
TU264215 lncRNA downstream 60303 6785451 ~ 6831962 (+) True G232827
TU264232 lncRNA downstream 114477 6839625 ~ 6841063 (+) True G232842
TU264266 lncRNA downstream 164773 6889921 ~ 6890149 (+) True G232871
TU264271 lncRNA downstream 190798 6915946 ~ 6917280 (+) True G232876
CI01000054_06437628_06441214.mRNA mRNA upstream 283361 6437628 ~ 6441481 (+) True CI01000054_06437628_06441214
CI01000054_06434217_06435680.mRNA mRNA upstream 289162 6433756 ~ 6435680 (+) True CI01000054_06434217_06435680
CI01000054_06411594_06411984.mRNA mRNA upstream 312321 6411594 ~ 6412521 (+) True CI01000054_06411594_06411984
CI01000054_06305908_06312122.mRNA mRNA upstream 412679 6305908 ~ 6312163 (+) False CI01000054_06305908_06312122
CI01000054_06292147_06297237.mRNA mRNA upstream 427282 6291976 ~ 6297560 (+) True CI01000054_06292147_06297237
CI01000054_06756071_06757443.mRNA mRNA downstream 30661 6755809 ~ 6757514 (+) True CI01000054_06756071_06757443
CI01000054_06759472_06761310.mRNA mRNA downstream 33663 6758811 ~ 6761310 (+) True CI01000054_06759472_06761310
CI01000054_06789505_06789810.mRNA mRNA downstream 63214 6788362 ~ 6789946 (+) True CI01000054_06789505_06789810
CI01000054_06795526_06796596.mRNA mRNA downstream 70378 6795526 ~ 6796644 (+) True CI01000054_06795526_06796596
CI01000054_06865381_06869404.mRNA mRNA downstream 140233 6865381 ~ 6869942 (+) True CI01000054_06865381_06869404
TU264006 other upstream 348948 6374850 ~ 6375894 (+) True G232659
TU263932 other upstream 417982 6304307 ~ 6304441 (+) True G232608
TU263881 other upstream 682979 5993660 ~ 6041863 (+) True G232558
TU263797 other upstream 1100167 5623015 ~ 5623101 (+) True G232485
TU263121 other upstream 2274112 4407152 ~ 4450730 (+) True G231863
TU264264 other downstream 162764 6887912 ~ 6888503 (+) False G232870
TU264265 other downstream 162966 6888114 ~ 6888503 (+) True G232870
TU264435 other downstream 842375 7567523 ~ 7609893 (+) True G233024
TU264744 other downstream 1579451 8304599 ~ 8304949 (+) True G233306
TU264679 other downstream 1580789 8305937 ~ 8306053 (+) True G233242

Expression Profile