RNA id: TU265244


Basic Information

Item Value
RNA id TU265244
length 200
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G233770
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 6778112 ~ 6778311 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATTGAACCAAATATCTTGTTGCTTGGCAAGCTACATTTTAAAAACAGAAACATTTCTGTATGCATCATATACTCACCTGCCACTCTATTAGGTACACCTTGCTAGTACAGGGTTGGACCCCTTTTTGCCTTCAGAACTGCCTTAATTCTTCGTGGCATAGATTCAAACAGGTGCTATAAACATTCCTTACAGATTTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265221 lncRNA downstream 42736 6735128 ~ 6735376 (-) True G233747
TU265186 lncRNA downstream 93241 6683852 ~ 6684871 (-) True G233712
TU265183 lncRNA downstream 96172 6681479 ~ 6681940 (-) True G233709
TU265178 lncRNA downstream 106560 6671352 ~ 6671552 (-) True G233704
TU265168 lncRNA downstream 117367 6660540 ~ 6660745 (-) True G233694
TU265267 lncRNA upstream 87074 6865385 ~ 6865511 (-) True G233791
TU265275 lncRNA upstream 105997 6884308 ~ 6884514 (-) True G233799
TU265279 lncRNA upstream 110397 6888708 ~ 6889021 (-) True G233803
TU265098 lncRNA upstream 166246 6944557 ~ 6945885 (-) True CI01000054_06946694_06947533
TU265096 lncRNA upstream 182062 6960373 ~ 6963408 (-) True G233627
CI01000054_06629482_06641861.mRNA mRNA downstream 135952 6629305 ~ 6642160 (-) False CI01000054_06629482_06641861
CI01000054_06503408_06508723.mRNA mRNA downstream 268044 6503233 ~ 6510068 (-) True CI01000054_06503408_06508723
CI01000054_06469564_06492881.mRNA mRNA downstream 285231 6468852 ~ 6492881 (-) True CI01000054_06469564_06492881
CI01000054_06422150_06433402.mRNA mRNA downstream 344423 6421808 ~ 6433689 (-) True CI01000054_06422150_06433402
CI01000054_06321499_06337371.mRNA mRNA downstream 440345 6321269 ~ 6337767 (-) True CI01000054_06321499_06337371
CI01000054_06830485_06831336.mRNA mRNA upstream 50681 6828992 ~ 6831336 (-) True CI01000054_06830485_06831336
CI01000054_06835747_06861855.mRNA mRNA upstream 56109 6834420 ~ 6863079 (-) True CI01000054_06835747_06861855
CI01000054_06874039_06875193.mRNA mRNA upstream 95009 6873320 ~ 6875309 (-) True CI01000054_06874039_06875193
CI01000054_06895032_06942103.mRNA mRNA upstream 116517 6894828 ~ 6942362 (-) True CI01000054_06895032_06942103
CI01000054_06946694_06947533.mRNA mRNA upstream 167071 6945382 ~ 6947680 (-) False CI01000054_06946694_06947533
TU265088 other downstream 124099 6649149 ~ 6654013 (-) True G233619
TU263564 other downstream 1568872 5206199 ~ 5209240 (-) True G232274
TU263226 other downstream 2105879 4672197 ~ 4672233 (-) True G231958
TU263225 other downstream 2105879 4672197 ~ 4672233 (-) True G231958
TU262888 other downstream 2795289 3981847 ~ 3982823 (-) True G231645
TU265381 other upstream 387124 7171325 ~ 7171673 (-) True G233891
TU266788 other upstream 2469728 9248039 ~ 9248538 (-) True G235216
TU266868 other upstream 2704836 9485215 ~ 9485318 (-) False G235290
TU266867 other upstream 2705041 9485215 ~ 9485318 (-) False G235290
TU266866 other upstream 2705139 9485215 ~ 9485318 (-) False G235290

Expression Profile