RNA id: TU265267


Basic Information

Item Value
RNA id TU265267
length 127
lncRNA type antisense_over
GC content 0.46
exon number 1
gene id G233791
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 6865385 ~ 6865511 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCCTGTCTTCAGTGCACAAGATCACATCGGTAAAGATCTGCTCATGTCTCAATATGTTCAACTGAAACAGGAGGTGAGCAGGGAGCTCTTGGTCCTTGAACGGAAAGACCTCTGTTGATGTACTAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265244 lncRNA downstream 87074 6778112 ~ 6778311 (-) True G233770
TU265221 lncRNA downstream 130009 6735128 ~ 6735376 (-) True G233747
TU265186 lncRNA downstream 180514 6683852 ~ 6684871 (-) True G233712
TU265183 lncRNA downstream 183445 6681479 ~ 6681940 (-) True G233709
TU265178 lncRNA downstream 193833 6671352 ~ 6671552 (-) True G233704
TU265275 lncRNA upstream 18797 6884308 ~ 6884514 (-) True G233799
TU265279 lncRNA upstream 23197 6888708 ~ 6889021 (-) True G233803
TU265098 lncRNA upstream 79046 6944557 ~ 6945885 (-) True CI01000054_06946694_06947533
TU265096 lncRNA upstream 94862 6960373 ~ 6963408 (-) True G233627
TU265289 lncRNA upstream 145553 7011064 ~ 7011977 (-) True G233812
CI01000054_06835747_06861855.mRNA mRNA downstream 2306 6834420 ~ 6863079 (-) True CI01000054_06835747_06861855
CI01000054_06830485_06831336.mRNA mRNA downstream 34049 6828992 ~ 6831336 (-) True CI01000054_06830485_06831336
CI01000054_06629482_06641861.mRNA mRNA downstream 223225 6629305 ~ 6642160 (-) False CI01000054_06629482_06641861
CI01000054_06503408_06508723.mRNA mRNA downstream 355317 6503233 ~ 6510068 (-) True CI01000054_06503408_06508723
CI01000054_06469564_06492881.mRNA mRNA downstream 372504 6468852 ~ 6492881 (-) True CI01000054_06469564_06492881
CI01000054_06874039_06875193.mRNA mRNA upstream 7809 6873320 ~ 6875309 (-) True CI01000054_06874039_06875193
CI01000054_06895032_06942103.mRNA mRNA upstream 29317 6894828 ~ 6942362 (-) True CI01000054_06895032_06942103
CI01000054_06946694_06947533.mRNA mRNA upstream 79871 6945382 ~ 6947680 (-) False CI01000054_06946694_06947533
CI01000054_06951426_06955263.mRNA mRNA upstream 85915 6951426 ~ 6955263 (-) True CI01000054_06951426_06955263
CI01000054_06956328_06957402.mRNA mRNA upstream 90810 6956321 ~ 6958488 (-) True CI01000054_06956328_06957402
TU265088 other downstream 211372 6649149 ~ 6654013 (-) True G233619
TU263564 other downstream 1656145 5206199 ~ 5209240 (-) True G232274
TU263226 other downstream 2193152 4672197 ~ 4672233 (-) True G231958
TU263225 other downstream 2193152 4672197 ~ 4672233 (-) True G231958
TU262888 other downstream 2882562 3981847 ~ 3982823 (-) True G231645
TU265381 other upstream 299924 7171325 ~ 7171673 (-) True G233891
TU266788 other upstream 2382528 9248039 ~ 9248538 (-) True G235216
TU266868 other upstream 2617636 9485215 ~ 9485318 (-) False G235290
TU266867 other upstream 2617841 9485215 ~ 9485318 (-) False G235290
TU266866 other upstream 2617939 9485215 ~ 9485318 (-) False G235290

Expression Profile