RNA id: TU265096


Basic Information

Item Value
RNA id TU265096
length 1357
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id G233627
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 6960373 ~ 6963408 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTTAACTGAAAACAACTTACACTGACAGATCTTAAAATATGTCAGTGCCATTGTTTTGTCTCAAGATGCACACGAGTAATGTTTTTTTCTAGGGAACGTTTATAAAAGATACTTAAATATCCTAATTGAACCAAGGCTTAATCCTGGCTTAGGCTAAGCCCTTTCTGTGAAACCGGGCCTATATCAATTTAATGATCCTTGCTGAATAAAGCATTAATTAAAAAAATTACTGACCCCAAACTTTTGAACTGTAGTGTACATAGATAGGTTAAGGACTTACTTGGCCTCAGGATGGACACGGGCAATTTTGCGAAGCTCTGCCTCATTTTCACACACCAGATAGTTAATGCCGCTCTTGGCAGCATGTTTAATGAGTGAGAGCTGCTTGCAAACTCCAGAGAGGATGATGTTTTCAGGAGGGACATCATGATGGAGTACCAATGTAGTTTCAGCCTGAAAAAAGTCAATAAATTTCTATTAGATGGTGTACCTCAAAATTCAATGGGATGTTTCAAAATATATGTTGAGATCTTTCTAATATCTTCAAGTAAAAAAAAATTAAACCTTAAACCTTATTGTTACCTTATTTGCACAGACAAAACCAACACCAAGTGCAGACAGGACTTCAATGACTACAGGGCTGCTGTTACAACAGACTGGGTAGAAGGGTCGAACTAGGGGCATAGTGGTCTTCCACAGTACATGCTGTCGCATTAGGGCCCCAAGGTCGGCCACAACAAATGCATTCTTTTCAGCCTGAGGAACAAAATCGGATCAAACAACGAAAAAGACAAAAACAACACCGCAGTGTTCCATTTGTTTACTAAAACAGACAATCATAATGCAACTTGACATGTACTTACCAAATTTTGTTCAAAGACATGGTTGTCGATAACATCTTCAAGGGTCGTACCTCCCTCAAGTAGTTCAATGAAGTAGTTTGGTGCATCAACGAATCCTTTCATCTCAACCGTATTCCGCAAATCCGACAATCATAGAGAGTTTACTGAGCCGCTGGGGTATTCTGGGTATGCAACAAAATGGACAACGTGGGAGATGGTCCTCTCCCGCTATCAACTAGGATCCCAAGGCGGCTCAGCGTTGAAGTCGAACTGCTCGCGGTAGAGGGCCTCCCCTAGGCCTTCTGGGTAGCGCTTATACACTCGCAGAGAGAGTGGGGAGCCGTGAGATAACGGCCTGAATGATTTGGAAAATCGTCTTCTCTTTTTCGGCGGAATTTTTAAAGAGTGGTGGGGACACAGATAGAAGAAAGAAAAGAGGCTTTATGTGCCATATGCCTGGGTGAAGAGGGCTCGGTCGAACACGAGAGCGCTGCTGTCTGTTTCAGGCAGAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265098 lncRNA downstream 14488 6944557 ~ 6945885 (-) True CI01000054_06946694_06947533
TU265279 lncRNA downstream 71352 6888708 ~ 6889021 (-) True G233803
TU265275 lncRNA downstream 75859 6884308 ~ 6884514 (-) True G233799
TU265267 lncRNA downstream 94862 6865385 ~ 6865511 (-) True G233791
TU265244 lncRNA downstream 182062 6778112 ~ 6778311 (-) True G233770
TU265289 lncRNA upstream 47656 7011064 ~ 7011977 (-) True G233812
TU265302 lncRNA upstream 76703 7040111 ~ 7049000 (-) True G233822
TU265323 lncRNA upstream 109418 7072826 ~ 7073170 (-) True G233843
TU265366 lncRNA upstream 176604 7140012 ~ 7140351 (-) True G233881
TU265386 lncRNA upstream 214432 7177840 ~ 7178439 (-) True G233896
CI01000054_06956328_06957402.mRNA mRNA downstream 1885 6956321 ~ 6958488 (-) True CI01000054_06956328_06957402
CI01000054_06951426_06955263.mRNA mRNA downstream 5110 6951426 ~ 6955263 (-) True CI01000054_06951426_06955263
CI01000054_06946694_06947533.mRNA mRNA downstream 12693 6945382 ~ 6947680 (-) False CI01000054_06946694_06947533
CI01000054_06895032_06942103.mRNA mRNA downstream 18011 6894828 ~ 6942362 (-) True CI01000054_06895032_06942103
CI01000054_06874039_06875193.mRNA mRNA downstream 85064 6873320 ~ 6875309 (-) True CI01000054_06874039_06875193
CI01000054_07006908_07009054.mRNA mRNA upstream 43467 7006875 ~ 7009054 (-) True CI01000054_07006908_07009054
CI01000054_07026336_07030820.mRNA mRNA upstream 62739 7026147 ~ 7031509 (-) True CI01000054_07026336_07030820
CI01000054_07033076_07038297.mRNA mRNA upstream 68292 7031700 ~ 7038297 (-) True CI01000054_07033076_07038297
CI01000054_07080724_07095503.mRNA mRNA upstream 116944 7080352 ~ 7095673 (-) True CI01000054_07080724_07095503
CI01000054_07130499_07136946.mRNA mRNA upstream 166907 7130315 ~ 7136946 (-) True CI01000054_07130499_07136946
TU265088 other downstream 306360 6649149 ~ 6654013 (-) True G233619
TU263564 other downstream 1751133 5206199 ~ 5209240 (-) True G232274
TU263226 other downstream 2288140 4672197 ~ 4672233 (-) True G231958
TU263225 other downstream 2288140 4672197 ~ 4672233 (-) True G231958
TU262888 other downstream 2977550 3981847 ~ 3982823 (-) True G231645
TU265381 other upstream 202027 7171325 ~ 7171673 (-) True G233891
TU266788 other upstream 2284631 9248039 ~ 9248538 (-) True G235216
TU266868 other upstream 2519739 9485215 ~ 9485318 (-) False G235290
TU266867 other upstream 2519944 9485215 ~ 9485318 (-) False G235290
TU266866 other upstream 2520042 9485215 ~ 9485318 (-) False G235290

Expression Profile