RNA id: TU265302


Basic Information

Item Value
RNA id TU265302
length 680
lncRNA type antisense_over
GC content 0.49
exon number 3
gene id G233822
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 7040111 ~ 7049000 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATACCTTAATAATGCATGAAATTTTTTAGGAAACAGTCATCAAAAATCATTGTGTATATTTACCTTAACAAACGGGAATGCTGGACCAGGAGCAAAGGGTTCATTCTCGTGCTCCACCTGATACCTGAGGTACTCCTCTATTCCTTGCTGCTCAAACACCTTCTGCTCTTTCTCTGTGCGGAACAGAACCCGCGATGACACTGCAATGGTGACTGCGTTCTCTGGTTTGGGAAAGAATATGCCTCCCTCCACCTTCCTGGCCCGTCTCACAGGTCCTGATTTGGGCTTCTTTGTAGTACCCATATTTTCATGGATATCCTTGCTGTCCTCCCAGGATGCTTTGCTATCACCGTTTGAGGCTGGCGGACAGGTGTTGGGCATGGGGTCTTGCCCCTTCATGACCTGAACAGGGTCAAGACTCATTCTCCCCAACGCTTCTCATTAACGACACACTGATCCAGGGCTGTATCACGCTGTGCTGTTCTCTCTGTTCACATGCACGGCCTCTATTCCACACACAGTGTATGTTCCCAGCTCTAGGCAGGTGGTATCCAATGGTGTATCTCCTGCTTCAGTGTCTAATGACAGTGCTGGCTTTGGTTCTGTGTGGCTATATCCTCTCTGCTCTGACGCTCTGCTTGCAATCTGCTGCTGTGACGCGGTATGTGTTGATATCTGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265289 lncRNA downstream 28134 7011064 ~ 7011977 (-) True G233812
TU265096 lncRNA downstream 76703 6960373 ~ 6963408 (-) True G233627
TU265098 lncRNA downstream 94226 6944557 ~ 6945885 (-) True CI01000054_06946694_06947533
TU265279 lncRNA downstream 151090 6888708 ~ 6889021 (-) True G233803
TU265275 lncRNA downstream 155597 6884308 ~ 6884514 (-) True G233799
TU265323 lncRNA upstream 23826 7072826 ~ 7073170 (-) True G233843
TU265366 lncRNA upstream 91012 7140012 ~ 7140351 (-) True G233881
TU265386 lncRNA upstream 128840 7177840 ~ 7178439 (-) True G233896
TU265389 lncRNA upstream 132769 7181769 ~ 7182120 (-) True G233899
TU265400 lncRNA upstream 143999 7192999 ~ 7198957 (-) False G233907
CI01000054_07033076_07038297.mRNA mRNA downstream 1814 7031700 ~ 7038297 (-) True CI01000054_07033076_07038297
CI01000054_07026336_07030820.mRNA mRNA downstream 8602 7026147 ~ 7031509 (-) True CI01000054_07026336_07030820
CI01000054_07006908_07009054.mRNA mRNA downstream 31057 7006875 ~ 7009054 (-) True CI01000054_07006908_07009054
CI01000054_06956328_06957402.mRNA mRNA downstream 81623 6956321 ~ 6958488 (-) True CI01000054_06956328_06957402
CI01000054_06951426_06955263.mRNA mRNA downstream 84848 6951426 ~ 6955263 (-) True CI01000054_06951426_06955263
CI01000054_07080724_07095503.mRNA mRNA upstream 31352 7080352 ~ 7095673 (-) True CI01000054_07080724_07095503
CI01000054_07130499_07136946.mRNA mRNA upstream 81315 7130315 ~ 7136946 (-) True CI01000054_07130499_07136946
CI01000054_07165957_07169539.mRNA mRNA upstream 116756 7165756 ~ 7169539 (-) False CI01000054_07165957_07169539
CI01000054_07228008_07231489.mRNA mRNA upstream 178594 7227594 ~ 7231489 (-) True CI01000054_07228008_07231489
CI01000054_07311700_07314853.mRNA mRNA upstream 262540 7311540 ~ 7317174 (-) True CI01000054_07311700_07314853
TU265088 other downstream 386098 6649149 ~ 6654013 (-) True G233619
TU263564 other downstream 1830871 5206199 ~ 5209240 (-) True G232274
TU263226 other downstream 2367878 4672197 ~ 4672233 (-) True G231958
TU263225 other downstream 2367878 4672197 ~ 4672233 (-) True G231958
TU262888 other downstream 3057288 3981847 ~ 3982823 (-) True G231645
TU265381 other upstream 116435 7171325 ~ 7171673 (-) True G233891
TU266788 other upstream 2199039 9248039 ~ 9248538 (-) True G235216
TU266868 other upstream 2434147 9485215 ~ 9485318 (-) False G235290
TU266867 other upstream 2434352 9485215 ~ 9485318 (-) False G235290
TU266866 other upstream 2434450 9485215 ~ 9485318 (-) False G235290

Expression Profile