RNA id: TCONS_00018761


Basic Information

Item Value
RNA id TCONS_00018761
length 2448
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id XLOC_008339
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 10863850 ~ 10866560 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCATGTAGAATACACTTTCTTATAAAGttatatttttcttatattttgtTAAAGGTCCTGTATGAAAAAAGGACACAGGAGAAAAATCATGTCTGTGAGATCTGGATCACTGTTTGCAAAGTCAAAGTGCAATTTATTTTCTTGGATGAAGTTCATATATCgGTTTGCTCAACGCCTTCAACTGAGACAAATTGACATGATTGAAGATGGCATTGCTGGAAGTTCAAGAACACTAAGCAGGATGGCCCAAAAAGTCAGAGGAATATGCAGATATTCTATGAAGCTGTATGCCAGAAAAAAAGGCCAAATGATTGGACATCCCAGAGAGTTTGTTATGATTGATGAAAGCAACTTCCGCCACAAACGAAAGGTAATTAAAATACAGCTTAAAATACAAGTCATATTGCAGAGATAAGAATATGTAATTGTGTGCATAAAGTATTAAATAGACATTACAAAGcaataattagaaaaatactatataaaatatatctatTATTCAATTTTACAAATGATCATGGTTTTATCCAGAAGTTGCTTTTTGTTGTCTCGCCTATACATCTATTTATTGATAGttattgctttaaaacattaaaaaataaaaaaaatatttttttttaataaaacataataataataataataaatacatatataaatgtaaaattgcaGAATTATAAAGACctaaacttttttaaataaacttgaccAGAaaaaattgcacaaacagcaagacatgagtgagatgattttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagtgtgtctgtgtgtgtttgtagagctTTCTCTTCTTCCTTGctcctgacagggatggaggaaggaaGTTGTATCCACCTTGCAATGCATTTTCCACTTCTTTTATCAGTggtgtggtatggacatttgtcctcactggATCTGTTATTAAAAGATAAacataattagtagtgaacaagtacaaatttaataaaaaaagaaacatgcttGCACACATAAGTACAACCTTAATAGgactatatatagatttttttttttttttgtattgaaatgtatatttaaaaccaaCTTACTGACTAGACTCCAACCAACTTACTCCTAAGGGGGAGTGCAAGAAAGGCCACTTTTTGGTTTGCCCCGCTCCAGTTAGGGTTAGGGCTCCAGTTAATTTGTTTAGTCAAGGAGTTAGCCAAAAACACCAATGATTCCAAAAATAGGcttacctacgaagcaaaaacaaacaaataaataaataaactaaaaacactttgaaataagcaAGAgtttgaacttaccagtttctttatttgttcgggctgctcctttagttgattttcaagcttttccatatcaaattggaaaaaggaaggtcaaatgtgtttacatctggaatttcatcacgtctgttttggttttgctgatctgtgagaatcaggcccagttGCTGCATTATGACGCCACATGATTTTAAAAcctcagtcagtcgtgctaaaaaagaaaaataacaaattagtataaatcaacctgtagcttattctcatacaacttgtgtaaatacaacagtgggttagataCTGCTGATAttttctagttgatctttactttatagctgcattaaaccttaacaaatttagtgatgtcttgaattcttacaaagacatgacgAGTTGCAACAAGTTCTGTCTGGATCTCCGACTGCACTAGAAcaaggactgtaaatgttcataggcaTACTGGAATGTTCAGCATCTgagcatcttgatggtggtcttaagaatTCTGGTGGtaatggtacttgtggtgctgcatcgATTTCTGAAATTTTCATATCTGTTTTTTTTCAAGCCtccttgttttaaatattttttcttcatcaCTGTCACTATAGTTGTGCCTTATGTACCatgatcagatacatttacaaaacaaaacatcattttagtatagtgccagggcaaaactcaaaGGTTGTAATAGATTATAAACTATTGAAATATTGTTGACAGTATGCGttcaaaataattgcaaacaaacctgttctttcTTTAGgtgtatgacaggcgatcatcgTCCTCATCTGTATGCCAGTCAGACATCACAGTTGCTTGTGGATgtttctataataaaacatcaaattgTTGTTAATCTCCCCCAAAGAAAAGTTAAAATtttgaaatactatcaaagttaattaatggctATAATACCTATACTGTAAATAATCAGCACCCTGAAGGTTGCACAAGAATTTATTCAGAGATTAATGCACattgacagccttatgaatcttagacatagatttgtaagatggctaAGCACGTGCATCATTTCAGCCATGACTTGCAAATACTGACCTCTTCTGTGCCAAGCTTGTTTGATCTTGCTCAAGGATCTTGTTGTGGAc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016721 lncRNA upstream 107067 10750208 ~ 10756943 (+) False XLOC_008337
TCONS_00016722 lncRNA upstream 107067 10750236 ~ 10756943 (+) False XLOC_008337
TCONS_00016723 lncRNA upstream 107067 10751101 ~ 10756943 (+) True XLOC_008337
TCONS_00016724 lncRNA upstream 109245 10752071 ~ 10754765 (+) False XLOC_008338
TCONS_00016725 lncRNA upstream 109245 10752117 ~ 10754765 (+) False XLOC_008338
TCONS_00016728 lncRNA downstream 436765 11303325 ~ 11305074 (+) True XLOC_008340
TCONS_00016733 lncRNA downstream 816529 11683089 ~ 11691460 (+) False XLOC_008345
TCONS_00016734 lncRNA downstream 816560 11683120 ~ 11686784 (+) True XLOC_008345
TCONS_00016741 lncRNA downstream 1115890 11982450 ~ 11985783 (+) False XLOC_008350
TCONS_00018892 lncRNA downstream 1115890 11982450 ~ 11986634 (+) False XLOC_008350
TCONS_00016717 mRNA upstream 990866 9861973 ~ 9873144 (+) True XLOC_008333
TCONS_00016714 mRNA upstream 1476220 9387350 ~ 9387790 (+) True XLOC_008328
TCONS_00016713 mRNA upstream 1510314 9327252 ~ 9353696 (+) True XLOC_008327
TCONS_00016711 mRNA upstream 1548444 9297340 ~ 9315566 (+) False XLOC_008326
TCONS_00016710 mRNA upstream 1559749 9294665 ~ 9304261 (+) False XLOC_008326
TCONS_00016729 mRNA downstream 514972 11381532 ~ 11394322 (+) True XLOC_008341
TCONS_00016730 mRNA downstream 561060 11427620 ~ 11443214 (+) True XLOC_008342
TCONS_00016732 mRNA downstream 777099 11643659 ~ 11671173 (+) True XLOC_008344
TCONS_00016736 mRNA downstream 827064 11693624 ~ 11757647 (+) False XLOC_008346
TCONS_00016735 mRNA downstream 827064 11693624 ~ 11757647 (+) True XLOC_008346
TCONS_00016719 other upstream 968024 9895858 ~ 9895986 (+) True XLOC_008335
TCONS_00016712 other upstream 1552532 9303809 ~ 9311478 (+) True XLOC_008326
TCONS_00016703 other upstream 1824846 9039050 ~ 9039164 (+) True XLOC_008321
TCONS_00016700 other upstream 2132144 8731752 ~ 8731866 (+) True XLOC_008318
TCONS_00016699 other upstream 2181073 8682822 ~ 8682937 (+) True XLOC_008317
TCONS_00016731 other downstream 698831 11565391 ~ 11565509 (+) True XLOC_008343
TCONS_00016757 other downstream 2658314 13524874 ~ 13524988 (+) True XLOC_008360
TCONS_00016758 other downstream 3091162 13957722 ~ 13957850 (+) True XLOC_008361
TCONS_00016791 other downstream 4527682 15394242 ~ 15401640 (+) True XLOC_008381
TCONS_00016809 other downstream 5652407 16518967 ~ 16519083 (+) True XLOC_008398

Expression Profile

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