RNA id: TU264476



Basic Information


Item Value
RNA id TU264476
length 641
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G233065
representative True

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 7420428 ~ 7421357 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TAATGTACCAACTACATTTCATAAAAGAAGTACCAGTGCTTGCAAGGCAAGGCAGAATAAGAAGAGTTTTCATTTTAAAACGCATAAGTTTTGCTATGGTTATACACTACGCCAGCGTTTTCGACCTCGAAAACGGAGACTTTCGAAAACGCTGGCATGGCTGCCCCGTATCCTTGACAACTGTGTAAACAATAACATAGAGATTGAACTGCAATCTTTGCTGGCTTTGTTGTCATTTTTAGCAGTCATTGTGCAGTTAAACTTAGCATTTTTTTAAATACTGCAGCTGCCTACATGCGCAAGAGGCAACTGTTTACACTTGTACGCGCATGCCCAGTGTGCATGAACAGTCATGTGACACGCATTTTCGGCTGTGTAGTGTAGACGGAGATCGTTTCCGAAACGGTGTGGAAACGCCAGTGTAGATGAGGATCGTTTTCAGTGTCAAGACGCCGTTTTAAAACAAAATCACACTAGTGTAAACAGGGCCTCAAAATTCAGTAGCCTATGTAACTATTGATGTCACTGCTGTCAATTAAGTTTTGAATTCAAAATATTCTGTCAGTGTCTACATTTACATTGACACCTTTTGTTTTAATCAATGAATCCCAACATTCAATTCATACAGGCTTGTAACAACT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU264464 lncRNA upstream 29534 7390578 ~ 7390894 (+) True G233053
TU264462 lncRNA upstream 30851 7389362 ~ 7389577 (+) True G233051
TU264461 lncRNA upstream 31080 7389144 ~ 7389348 (+) True G233050
TU264419 lncRNA upstream 33244 7362203 ~ 7387184 (+) True G233010
TU264445 lncRNA upstream 73425 7346803 ~ 7347003 (+) True G233034
TU264427 lncRNA downstream 87409 7508766 ~ 7513700 (+) True G233017
TU264429 lncRNA downstream 93047 7514404 ~ 7516606 (+) True G233018
TU264517 lncRNA downstream 310498 7731855 ~ 7732104 (+) True G233096
TU264436 lncRNA downstream 313464 7734821 ~ 7736502 (+) True G233025
TU264441 lncRNA downstream 364720 7786077 ~ 7812277 (+) True G233030
CI01000054_07271120_07280248.mRNA mRNA upstream 140063 7270906 ~ 7280365 (+) True CI01000054_07271120_07280248
CI01000054_07252016_07252204.mRNA mRNA upstream 168011 7251801 ~ 7252417 (+) True CI01000054_07252016_07252204
CI01000054_07240475_07241355.mRNA mRNA upstream 177970 7240423 ~ 7242458 (+) True CI01000054_07240475_07241355
CI01000054_07209423_07216395.mRNA mRNA upstream 203218 7209423 ~ 7217210 (+) True CI01000054_07209423_07216395
CI01000054_07198599_07202146.mRNA mRNA upstream 218135 7198599 ~ 7202293 (+) True CI01000054_07198599_07202146
CI01000054_07438245_07449632.mRNA mRNA downstream 16075 7437432 ~ 7449712 (+) True CI01000054_07438245_07449632
CI01000054_07454627_07503082.mRNA mRNA downstream 33270 7454627 ~ 7503082 (+) True CI01000054_07454627_07503082
CI01000054_07539134_07556858.mRNA mRNA downstream 117777 7539134 ~ 7558395 (+) True CI01000054_07539134_07556858
CI01000054_07582152_07584554.mRNA mRNA downstream 160623 7581980 ~ 7584692 (+) True CI01000054_07582152_07584554
CI01000054_07599184_07601743.mRNA mRNA downstream 176549 7597906 ~ 7603125 (+) True CI01000054_07599184_07601743
TU264264 other upstream 531925 6887912 ~ 6888503 (+) False G232870
TU264265 other upstream 531925 6888114 ~ 6888503 (+) True G232870
TU264006 other upstream 1044534 6374850 ~ 6375894 (+) True G232659
TU263932 other upstream 1113568 6304307 ~ 6304441 (+) True G232608
TU263881 other upstream 1378565 5993660 ~ 6041863 (+) True G232558
TU264435 other downstream 146166 7567523 ~ 7609893 (+) True G233024
TU264744 other downstream 883242 8304599 ~ 8304949 (+) True G233306
TU264679 other downstream 884580 8305937 ~ 8306053 (+) True G233242
TU267167 other downstream 2966779 10388136 ~ 10392378 (+) True G235560
TU267998 other downstream 4143619 11564976 ~ 11565121 (+) True G236317

Expression Profile