RNA id: TU264429



Basic Information


Item Value
RNA id TU264429
length 1873
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id G233018
representative True

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 7514404 ~ 7516606 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGACTGCTTGACAAAGACTGTGTAATGCGTTTTATTATGCATCAGACATACAAAGCAACAAATGTTTATATTAAAGTAGTTCTAGACTTTCAGGATGCTAATTATAAATGAACAGCAAATTAAATTACGACTGCTACCCAAAACAAAAGCCCATTAGGAGACATTCAGTGTAAAGCGACATTCGTGTTCAAAAGATATGAAGAAAGAAGAAACATACAACACCTGAGCTACAGTATGATATCAGTGAGGCAGAAGGGGGGTACATTAAATCATTTTTGGTCACGCTGGAGATTTCCACCCTCCATCTAGTTAAGTCACAACACAAACACATAAAACAACTGTTTAAACAGATTATCGTTGACAATATTTTTCATAGTAGTATTTTTTAAATATAGTATATGACTACCAGAGCTAGACTGATAGATCAAACATGTTGAACTTAAACCTCTGTAAACATCTGTATTCCTATATATTTCTAGCAACAGCATAGCAGCAAGCATATTACATTTGCTTGTCTATGTGTATCAAAGCAAAATGCAAGAATGTAGTACACTCATTAAGAGCAAAGAATGAAATGTTAATGTATCTGCTTTGAACGCAACTAGCATGCAGAAGCCCCTGCACCTTAACATATCATAAATGTTACTAAATATCTACAAACTCAATAAAAAATATACTTTTTTAACCTATAACATCAACTTATTTTGTAGTTTAAGAACTTGACAGCAGGTACTACAGTGTAAGCGGATCCATTAACTACACTAACAATAGTAGAATTAGTGCTTGGAAATATGTAGTTGCGCTGGATATAAAGCTAATCGTTTTATATTAACACTGCTTTTTGGCTGCGTTACACAGTTTAAAAACAACAGGGAAAAGGTGTCATATAGTCAAGAAGACTATGATATCTATTCCTCTCATAGTATGTCCTGTCGTCTGAAAGAAACTACAGCAGTGGTCCAATTATAAAGCCATCAGAAAGGCATTCAAAGTGAGATTCAAGGGATAGTTCACATCTTTAGCAACTAAAGGCACTAGAATCTCAGTGGTGCCACTATCCTAACGCTACAAAAATAAAGTCACAAAGCACGCAAGTATTCTCATTTTATGACACAAACTCTCTAAAACTACAGTACAGAAAAAAAAAATTAATGAAATATTTTGTAACGTCACTACTGTTTGATCATATTTGGTATTAAAGTAATACACATACTTACTATGCAAAAATCTTTTAGTTTCAAGTACACACTTAAGGAGACAGAACTCATGTTCTGCATTTTTTTGGCATTTGTTTAAAAAAAAAAAAAAAAAAAAAAAATGGAAAAATAACTATAAACAGAAAGAAATTTGGTTAATTTGGCTGGCGATTTTAAGTAGTTGGATGAAGATGTACACAAATAAGGAAATTCAAATTTTTATAATGACTTTAGGATTTTTTTCTTCAAAAGGGACCTTTGAAGGACAGCCTGAACATACATCTCACATTCTGATACATCTGCTCCAGTGTAGGACTACCACGTCCCGTCTGGAGATAAACCAGACTCCGGTAGACAAAAGTGGCCACAAAGCAAAGCTCACTGTAACTATGCAAAAGTACCGCTGTGAAGTGGAAGGAGAACAGGAGGTAAAAAGAAAGAAGCGTTTGAAGGTGGATCCTCAGTGTGTTTGTTGATCTGGTGGAAACGTTCCCTCCGGCTGTTTAACCACTGGCTCTCCGTCAGGTGTGGAGTCTGAAACCTCTTCAATATCTCCTGTCGATGGTGTCGGGCTTATCTTAGTCTGTAAAGTCAGAAATGAGACTGGGATTTTCAACATTTTTAACTGGCATACACAGTGGCCCTGTTTACACCTGGTATTAAAGGATTAGTTCACT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU264427 lncRNA upstream 704 7508766 ~ 7513700 (+) True G233017
TU264476 lncRNA upstream 93047 7420428 ~ 7421357 (+) True G233065
TU264464 lncRNA upstream 123510 7390578 ~ 7390894 (+) True G233053
TU264462 lncRNA upstream 124827 7389362 ~ 7389577 (+) True G233051
TU264461 lncRNA upstream 125056 7389144 ~ 7389348 (+) True G233050
TU264517 lncRNA downstream 215249 7731855 ~ 7732104 (+) True G233096
TU264436 lncRNA downstream 218215 7734821 ~ 7736502 (+) True G233025
TU264441 lncRNA downstream 269471 7786077 ~ 7812277 (+) True G233030
TU264437 lncRNA downstream 274424 7791030 ~ 7793543 (+) True G233026
TU264544 lncRNA downstream 312664 7829270 ~ 7829472 (+) True G233123
CI01000054_07454627_07503082.mRNA mRNA upstream 11322 7454627 ~ 7503082 (+) True CI01000054_07454627_07503082
CI01000054_07438245_07449632.mRNA mRNA upstream 64692 7437432 ~ 7449712 (+) True CI01000054_07438245_07449632
CI01000054_07271120_07280248.mRNA mRNA upstream 234039 7270906 ~ 7280365 (+) True CI01000054_07271120_07280248
CI01000054_07252016_07252204.mRNA mRNA upstream 261987 7251801 ~ 7252417 (+) True CI01000054_07252016_07252204
CI01000054_07240475_07241355.mRNA mRNA upstream 271946 7240423 ~ 7242458 (+) True CI01000054_07240475_07241355
CI01000054_07539134_07556858.mRNA mRNA downstream 22528 7539134 ~ 7558395 (+) True CI01000054_07539134_07556858
CI01000054_07582152_07584554.mRNA mRNA downstream 65374 7581980 ~ 7584692 (+) True CI01000054_07582152_07584554
CI01000054_07599184_07601743.mRNA mRNA downstream 81300 7597906 ~ 7603125 (+) True CI01000054_07599184_07601743
CI01000054_07620269_07633084.mRNA mRNA downstream 102131 7618737 ~ 7633111 (+) True CI01000054_07620269_07633084
CI01000054_07675827_07711906.mRNA mRNA downstream 159221 7675827 ~ 7711982 (+) True CI01000054_07675827_07711906
TU264264 other upstream 625901 6887912 ~ 6888503 (+) False G232870
TU264265 other upstream 625901 6888114 ~ 6888503 (+) True G232870
TU264006 other upstream 1138510 6374850 ~ 6375894 (+) True G232659
TU263932 other upstream 1207544 6304307 ~ 6304441 (+) True G232608
TU263881 other upstream 1472541 5993660 ~ 6041863 (+) True G232558
TU264435 other downstream 50917 7567523 ~ 7609893 (+) True G233024
TU264744 other downstream 787993 8304599 ~ 8304949 (+) True G233306
TU264679 other downstream 789331 8305937 ~ 8306053 (+) True G233242
TU267167 other downstream 2871530 10388136 ~ 10392378 (+) True G235560
TU267998 other downstream 4048370 11564976 ~ 11565121 (+) True G236317

Expression Profile