RNA id: TU264435



Basic Information


Item Value
RNA id TU264435
length 2114
RNA type TUCP
GC content 0.42
exon number 4
gene id G233024
representative True

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 7567523 ~ 7609893 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTTTTTTTTTTTTTTTTTTTTTTTTTTATTATCATTCCAAGAAACCCAAGCCTTTATTCACCACAGCTTGCTTCCAAAGTTACATGTGTGAAGGGAATAAAACACACAGCTGGAAGAGAAAGATGAAAGTGGGCAGGTTTGTGACATTAAAGCTACTTACACAATAGCTATGGCACATTATAACACCGTCTACCCACACTGCTCTTGACACACACACACACACTTACACACACACCATCTTGCAATGTCCATTTTATTACCAGATATTGACCTCCAAAAACCTGAAAATCAACAATTAGAATTGGAGAACTTCAGTACACGTGATTCTCAAGAACTCAAGGTTAACTTGATGTTATGCTGTGAGCATAAATGCAACCCAGACTATGGTCAAACACAGGTCAAGAGACGTCACATGACTTCGGCGTGGCACAAACAGCAGTTCCTCTTGGGCAACATGACATTTTTTACTAAATCATGCTGACCAGGGGCATATAAGTATGTGTGTGTGTGTGTGTGTGTCTGTGTGTTGTGACTATATACCAGATGAATGTATGAAGAAAGAGCTAGAGATTGTTGTAAATGCTATGTTAGTGACCGGTTAGAGCTGTGTGTACTGTAGTGTGGCGGCTTTTACTCTCTTCACATGGACATAGAGACACTAACATGATCATTGCGTTTAGAGAAGACATTGCAAATGTCAGCTAGCCAGCAAACTCACAAACACCAAAGCCTGGTACAAGAGAAACTGTAGCAGATCTGAGAGAGAGAGAGGGAGGAAACAAGTACATCCACTAAAAGATAAAGATACAGAGAGAGAAACTTATAAAATGGCACACCGCAATACTTTTCATCATCTCATATAAAACAAATAGGAAGTATTTACAAAAAAAACCACACCCACTTTGACTGGTTTCAAATTGATCAAAAACATTTTTTTTTCTTGATTAATGGTGTTCCTTTTCTCTTATGGACTATATCGGGCAGGATGCTGTTGGTGAGGGGGGCAGGGTCGATTCTTTTGGCCTGGGCGGGGCGGGGCAGGGGGGTGGTGCGCCAGAGGCTCTTTTCTACTCAGGGCTGCGGTGGCAGGGTGAGAGGGGGTCTCTCTGGGGACGGGAGGTCGCAGGTATGGGGAGAGGGGGTGGGGTGATGGGACGGTGGGTGTACAGAGATGTGCTCATGCTGTCAGCTCTTCCCTCAGCTCTTTGTTTCTGCGCACCACCTGAGCGTGCCTCTCCTTCTCCTCTGCCATCCTGCTGAAGTTGCTGTTCTCCTCCATGGCTTTCAGCAGGACGTCCCGCTCATGTTCACGTTTCTCAGCCAGGGCCCTCAGGATTTGAGCCTCCTGGGACTGGAGAGGAAGAGTGGGGCAGAGTGAAATGAAATAGGTGTATATAAAATAAATATAAAATAATAGGAATAAAATAATAGAAATAAAATGGCAATGACAGATATACAGTATAGTACAGATATATTATACAAATAAGTGGGTCACTTACTCTCCTCCTGTCCTCTGCAGCCTCCAGCTTCTTCTGGATGTCCTCCAGAGACATGTCCCTCTTTTTAGGAGGTGAAGTGATGCTGTAGCCCCCATCAGCCGTGGGAGAAGGTGGCTTCAGGATGACCTCAAAGGCCTGGCCAGAAGCCCGCTTGTTAATGGGCTTAACCTCCATGTCTGAGCCTTCAAACTCGCCCATGAGGTTTTTGCGTGCCTCTGGGTAGAGACAGGAGCAGATGAGGGAGACAAGGGAGAGCTCCTTCATCTTCTCTTTGTATGCTGCAGAGAGACACATCAAACAAAAGTATTGACCCAGATTTTCTCTAGCTGTTTTATGAATGATTATTCGAAACTGCATCACTAATGTTGCAGAAAATAACCCAAGTCATCTAGGTTTTGAATCAGAGGTGCACTGACTGATATAAAATATACATATTAACAGAATAAATAGTTAAAATATGTAGATCAGTAGATATGTAGAATCATCTATCTATCTATCTATATACAGAAATGTATATATTGTGTGTAAAAATGTTAAATATAAAAGAAAAGAAATTGTATATACAATTTTATTATTATAATAAGTTAATTGGTAACACTTTCCAATAAGGTCTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU264429 lncRNA upstream 50917 7514404 ~ 7516606 (+) True G233018
TU264427 lncRNA upstream 53823 7508766 ~ 7513700 (+) True G233017
TU264476 lncRNA upstream 146166 7420428 ~ 7421357 (+) True G233065
TU264464 lncRNA upstream 176629 7390578 ~ 7390894 (+) True G233053
TU264462 lncRNA upstream 177946 7389362 ~ 7389577 (+) True G233051
TU264517 lncRNA downstream 121962 7731855 ~ 7732104 (+) True G233096
TU264436 lncRNA downstream 124928 7734821 ~ 7736502 (+) True G233025
TU264441 lncRNA downstream 176184 7786077 ~ 7812277 (+) True G233030
TU264437 lncRNA downstream 181137 7791030 ~ 7793543 (+) True G233026
TU264544 lncRNA downstream 219377 7829270 ~ 7829472 (+) True G233123
CI01000054_07539134_07556858.mRNA mRNA upstream 9128 7539134 ~ 7558395 (+) True CI01000054_07539134_07556858
CI01000054_07454627_07503082.mRNA mRNA upstream 64441 7454627 ~ 7503082 (+) True CI01000054_07454627_07503082
CI01000054_07438245_07449632.mRNA mRNA upstream 117811 7437432 ~ 7449712 (+) True CI01000054_07438245_07449632
CI01000054_07271120_07280248.mRNA mRNA upstream 287158 7270906 ~ 7280365 (+) True CI01000054_07271120_07280248
CI01000054_07252016_07252204.mRNA mRNA upstream 315106 7251801 ~ 7252417 (+) True CI01000054_07252016_07252204
CI01000054_07620269_07633084.mRNA mRNA downstream 8844 7618737 ~ 7633111 (+) True CI01000054_07620269_07633084
CI01000054_07675827_07711906.mRNA mRNA downstream 65934 7675827 ~ 7711982 (+) True CI01000054_07675827_07711906
CI01000054_07719547_07722201.mRNA mRNA downstream 109604 7719497 ~ 7722271 (+) True CI01000054_07719547_07722201
CI01000054_07726558_07730944.mRNA mRNA downstream 116665 7726558 ~ 7731011 (+) True CI01000054_07726558_07730944
CI01000054_07755766_07787767.mRNA mRNA downstream 145873 7755766 ~ 7788110 (+) True CI01000054_07755766_07787767
TU264264 other upstream 679020 6887912 ~ 6888503 (+) False G232870
TU264265 other upstream 679020 6888114 ~ 6888503 (+) True G232870
TU264006 other upstream 1191629 6374850 ~ 6375894 (+) True G232659
TU263932 other upstream 1260663 6304307 ~ 6304441 (+) True G232608
TU263881 other upstream 1525660 5993660 ~ 6041863 (+) True G232558
TU264744 other downstream 694706 8304599 ~ 8304949 (+) True G233306
TU264679 other downstream 696044 8305937 ~ 8306053 (+) True G233242
TU267167 other downstream 2778243 10388136 ~ 10392378 (+) True G235560
TU267998 other downstream 3955083 11564976 ~ 11565121 (+) True G236317
TU268596 other downstream 4023083 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069

Expression Profile