RNA id: TU265538



Basic Information


Item Value
RNA id TU265538
length 1160
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G234042
representative True

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 7629577 ~ 7630828 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTCCCAGAAAGGCGGGTCTGGAGCTAGGCGGGAGGTGAACACATATGTAATACACAGGAGCCCCGGAGAGCGCAACAATGATTCCCACCAGAGAGTTTATGGTGTCACTGTAGAGTGGTACAATCACCAGAAACACGCTGCACATACAGTACACTATAGGGAAGAACAGACTCAGCTACATGGAAACAAAAACACACAGAGTCAATTAAGCACTTCATAAACCAGGGCAATAAAGAAATAAAAACATCAACTGTTTTGCAAGCATTAAATATTGCTATTATCTAAGTATTTTAAGGCATCATAAATGTGCTCCTGATTCACGAACCACCCACACTCCATTATCTGAACGATGTAGCCATCTGATGCATATGGCACAAAAAACTTGAAACACTTTCACAAAGGCAAAAGTCTAAATCTGACTGGTCTTGACAATGCAAGAGGTGAGCACTCTGTAAAGTCTCCTCCAGCACAACCCAAAGACTTTCAATGAATTTAAGGTCTGGACTCAGAGGTGCCAATTCATGTGTGAAAATGATTCTTCATGCTCTCTCCCAACCATTTTTTCACAATTTGAGCCTTATGAATCTTGACATTGTCATCCTGGAATATGGCCATGACGTGTCATCCTACATGGTTGTTTAAGAAATGAAAAGCTACACACTCCATCTTTAAAGCTTAAAAGAACTGTTCCCAAACATGTAACATGCTAGAAACATAATAATCACAGCAATAATGATACAGTCAGACTCTGTATTTGCCTATTTAAATCCAAACAGCGACTTTTTTTGCCAGTCAGTGTATATCCAGGGAAACGGATCCTTGAACAAGAAAAAAAAAAAAAAAAAAATATGTAGGGCTGGACTTGATTTTGTCCATCAGGAATTGATTGATCTTTGATCGTTTTGGTTTAGTTTTGCTGCGATCTCATTCATGATCTCATGAGTGACAGGTTGTCCCGCCCTTGCGCCGAAAAACATAGCTTCCTCTGATGATATTTAGAATAAAGATTATAAGGGAACATAAATTTTCTATAATAAATTCTTTAAAAAAAAATGTATTAAAAATGTTAACTACAGGAACCCGAATGTTGCACTTTACTGAAATCAATTGTGAGTTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGTCATTAATTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU265521 lncRNA downstream 62068 7567234 ~ 7567509 (-) True G234025
TU265520 lncRNA downstream 62391 7566956 ~ 7567186 (-) True G234024
TU265519 lncRNA downstream 63052 7566239 ~ 7566525 (-) True G234023
TU265438 lncRNA downstream 119919 7508368 ~ 7509658 (-) True G233942
TU265416 lncRNA downstream 291461 7337904 ~ 7338116 (-) True G233922
TU265535 lncRNA upstream 2174 7633002 ~ 7634751 (-) True G234039
TU265553 lncRNA upstream 6674 7637502 ~ 7637975 (-) True G234057
TU265570 lncRNA upstream 70047 7700875 ~ 7704166 (-) True G234071
TU265597 lncRNA upstream 75268 7706096 ~ 7707359 (-) True G234097
TU265565 lncRNA upstream 103827 7734655 ~ 7736512 (-) True G234066
CI01000054_07607425_07611037.mRNA mRNA downstream 18540 7606500 ~ 7611037 (-) True CI01000054_07607425_07611037
CI01000054_07516390_07526784.mRNA mRNA downstream 102128 7516167 ~ 7527449 (-) True CI01000054_07516390_07526784
CI01000054_07418471_07418846.mRNA mRNA downstream 210724 7418167 ~ 7418853 (-) True CI01000054_07418471_07418846
CI01000054_07398765_07399272.mRNA mRNA downstream 229523 7398554 ~ 7400054 (-) True CI01000054_07398765_07399272
CI01000054_07390631_07391977.mRNA mRNA downstream 236474 7390586 ~ 7393103 (-) True CI01000054_07390631_07391977
CI01000054_07642350_07658894.mRNA mRNA upstream 10972 7641800 ~ 7660515 (-) True CI01000054_07642350_07658894
CI01000054_07712126_07718933.mRNA mRNA upstream 81207 7712035 ~ 7718933 (-) True CI01000054_07712126_07718933
CI01000054_07723457_07725732.mRNA mRNA upstream 92580 7723408 ~ 7725732 (-) True CI01000054_07723457_07725732
CI01000054_07737375_07747797.mRNA mRNA upstream 106426 7737254 ~ 7747797 (-) True CI01000054_07737375_07747797
CI01000054_07793409_07805739.mRNA mRNA upstream 162371 7793199 ~ 7805739 (-) True CI01000054_07793409_07805739
TU265381 other downstream 457904 7171325 ~ 7171673 (-) True G233891
TU265088 other downstream 975564 6649149 ~ 6654013 (-) True G233619
TU263564 other downstream 2420337 5206199 ~ 5209240 (-) True G232274
TU263226 other downstream 2957344 4672197 ~ 4672233 (-) True G231958
TU266788 other upstream 1617211 9248039 ~ 9248538 (-) True G235216
TU266868 other upstream 1852319 9485215 ~ 9485318 (-) False G235290
TU266867 other upstream 1852524 9485215 ~ 9485318 (-) False G235290
TU266866 other upstream 1852622 9485215 ~ 9485318 (-) False G235290
TU266865 other upstream 1852656 9485215 ~ 9485318 (-) False G235290

Expression Profile