Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU265570 |
| length | 754 |
| lncRNA type | antisense_over |
| GC content | 0.59 |
| exon number | 2 |
| gene id | G234071 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000054 |
| NCBI id | null |
| chromosome length | 13006764 |
| location | 7700875 ~ 7704166 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU265553 | lncRNA | downstream | 62900 | 7637502 ~ 7637975 (-) | True | G234057 |
| TU265535 | lncRNA | downstream | 66124 | 7633002 ~ 7634751 (-) | True | G234039 |
| TU265538 | lncRNA | downstream | 70047 | 7629577 ~ 7630828 (-) | True | G234042 |
| TU265521 | lncRNA | downstream | 133366 | 7567234 ~ 7567509 (-) | True | G234025 |
| TU265520 | lncRNA | downstream | 133689 | 7566956 ~ 7567186 (-) | True | G234024 |
| TU265597 | lncRNA | upstream | 1930 | 7706096 ~ 7707359 (-) | True | G234097 |
| TU265565 | lncRNA | upstream | 30489 | 7734655 ~ 7736512 (-) | True | G234066 |
| TU265601 | lncRNA | upstream | 47039 | 7751205 ~ 7751415 (-) | True | G234101 |
| TU265621 | lncRNA | upstream | 112065 | 7816231 ~ 7817329 (-) | False | G234120 |
| TU265622 | lncRNA | upstream | 112065 | 7816231 ~ 7818263 (-) | True | G234120 |
| CI01000054_07642350_07658894.mRNA | mRNA | downstream | 40360 | 7641800 ~ 7660515 (-) | True | CI01000054_07642350_07658894 |
| CI01000054_07607425_07611037.mRNA | mRNA | downstream | 89838 | 7606500 ~ 7611037 (-) | True | CI01000054_07607425_07611037 |
| CI01000054_07516390_07526784.mRNA | mRNA | downstream | 173426 | 7516167 ~ 7527449 (-) | True | CI01000054_07516390_07526784 |
| CI01000054_07418471_07418846.mRNA | mRNA | downstream | 282022 | 7418167 ~ 7418853 (-) | True | CI01000054_07418471_07418846 |
| CI01000054_07398765_07399272.mRNA | mRNA | downstream | 300821 | 7398554 ~ 7400054 (-) | True | CI01000054_07398765_07399272 |
| CI01000054_07712126_07718933.mRNA | mRNA | upstream | 7869 | 7712035 ~ 7718933 (-) | True | CI01000054_07712126_07718933 |
| CI01000054_07723457_07725732.mRNA | mRNA | upstream | 19242 | 7723408 ~ 7725732 (-) | True | CI01000054_07723457_07725732 |
| CI01000054_07737375_07747797.mRNA | mRNA | upstream | 33088 | 7737254 ~ 7747797 (-) | True | CI01000054_07737375_07747797 |
| CI01000054_07793409_07805739.mRNA | mRNA | upstream | 89033 | 7793199 ~ 7805739 (-) | True | CI01000054_07793409_07805739 |
| CI01000054_07874540_07894985.mRNA | mRNA | upstream | 170078 | 7874244 ~ 7895322 (-) | True | CI01000054_07874540_07894985 |
| TU265381 | other | downstream | 529202 | 7171325 ~ 7171673 (-) | True | G233891 |
| TU265088 | other | downstream | 1046862 | 6649149 ~ 6654013 (-) | True | G233619 |
| TU263564 | other | downstream | 2491635 | 5206199 ~ 5209240 (-) | True | G232274 |
| TU263226 | other | downstream | 3028642 | 4672197 ~ 4672233 (-) | True | G231958 |
| TU266788 | other | upstream | 1543873 | 9248039 ~ 9248538 (-) | True | G235216 |
| TU266868 | other | upstream | 1778981 | 9485215 ~ 9485318 (-) | False | G235290 |
| TU266867 | other | upstream | 1779186 | 9485215 ~ 9485318 (-) | False | G235290 |
| TU266866 | other | upstream | 1779284 | 9485215 ~ 9485318 (-) | False | G235290 |
| TU266865 | other | upstream | 1779318 | 9485215 ~ 9485318 (-) | False | G235290 |
