RNA id: TU265730


Basic Information

Item Value
RNA id TU265730
length 523
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G234220
representative False

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8121178 ~ 8121700 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGACCATGATATTACTGTGCTTTATTGGCCAGCCAATATGCCTGACCTGAATCTATGGGATATTTTCAAGAGAAAGATGAGAAACAGTCGATCCAACAATATACAGATGATCTGAAGGCTCAATAGTGCCTCAGCAGTGCCACAGGCTGATCACTTCCATGCCACACTTCACTGATGCAGTAATTTGTGCTAGGAGCAAGTCATTTGCTGTAATACGTCCTGCCGATCAAGTATTGAGTGCACAAAAGAACATACTTTAAAGAACTTTAACTTTTCTGTTTTGCAAATCCATTTTTTGATTGATTTTAGGAAATATTCTAATATTTTGAAATACTGGATTTTGGACTTTCATGAGCTGTACGCTCTAATCATCAAAATTAAAAAAAAAAAACTTTTGAAATGTTTTACTTTACATGTAGGGAATCTAGAATATATGAAAGTTTCATTTTTAAAAATAATTTATAATAAAAAAATGAACTTTTTGATGATATTCTAATTATATGACCAGCACCTGTATATACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265718 lncRNA downstream 81381 8039399 ~ 8039797 (-) True G234210
TU265715 lncRNA downstream 89780 8030895 ~ 8031398 (-) True G234207
TU265669 lncRNA downstream 220398 7900538 ~ 7900780 (-) True G234167
TU265564 lncRNA downstream 284338 7836063 ~ 7836840 (-) True G234065
TU265633 lncRNA downstream 286557 7834072 ~ 7834621 (-) True G234131
TU265783 lncRNA upstream 89370 8211070 ~ 8211278 (-) True G234268
TU265820 lncRNA upstream 162572 8284272 ~ 8284602 (-) True G234298
TU265847 lncRNA upstream 182314 8304014 ~ 8304462 (-) True G234320
TU265848 lncRNA upstream 182903 8304603 ~ 8304960 (-) True G234321
TU265849 lncRNA upstream 207765 8329465 ~ 8333698 (-) True G234322
CI01000054_08099220_08112291.mRNA mRNA downstream 8887 8097675 ~ 8112291 (-) True CI01000054_08099220_08112291
CI01000054_08091223_08096443.mRNA mRNA downstream 24735 8090597 ~ 8096443 (-) True CI01000054_08091223_08096443
CI01000054_08032736_08043035.mRNA mRNA downstream 77862 8032385 ~ 8043316 (-) True CI01000054_08032736_08043035
CI01000054_08021522_08026014.mRNA mRNA downstream 95164 8020943 ~ 8026014 (-) True CI01000054_08021522_08026014
CI01000054_07985093_07994157.mRNA mRNA downstream 126247 7984803 ~ 7994931 (-) True CI01000054_07985093_07994157
CI01000054_08228712_08238666.mRNA mRNA upstream 106961 8228661 ~ 8238666 (-) True CI01000054_08228712_08238666
CI01000054_08272679_08293481.mRNA mRNA upstream 150819 8272519 ~ 8295165 (-) True CI01000054_08272679_08293481
CI01000054_08353876_08358232.mRNA mRNA upstream 231676 8353376 ~ 8358232 (-) True CI01000054_08353876_08358232
CI01000054_08375424_08376756.mRNA mRNA upstream 253371 8375071 ~ 8376980 (-) True CI01000054_08375424_08376756
CI01000054_08400578_08406066.mRNA mRNA upstream 278831 8400531 ~ 8406066 (-) True CI01000054_08400578_08406066
TU265381 other downstream 949505 7171325 ~ 7171673 (-) True G233891
TU265088 other downstream 1467165 6649149 ~ 6654013 (-) True G233619
TU263564 other downstream 2911938 5206199 ~ 5209240 (-) True G232274
TU263226 other downstream 3448945 4672197 ~ 4672233 (-) True G231958
TU266788 other upstream 1126339 9248039 ~ 9248538 (-) True G235216
TU266868 other upstream 1361447 9485215 ~ 9485318 (-) False G235290
TU266867 other upstream 1361652 9485215 ~ 9485318 (-) False G235290
TU266866 other upstream 1361750 9485215 ~ 9485318 (-) False G235290
TU266865 other upstream 1361784 9485215 ~ 9485318 (-) False G235290

Expression Profile