RNA id: TU264761


Basic Information

Item Value
RNA id TU264761
length 236
lncRNA type intronic
GC content 0.36
exon number 1
gene id G233322
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8494244 ~ 8494479 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATTCGTATGACCTTATTCGTACGAATTCGTACGTTTTTTGCTAAATTATATGTATTTTACAAGTTGCCAAATTCGTATGAATTTGTATGAATGACCTACCCTTAACCCTGCCCCTAAACCTACCCGTCACTGGGGTTTAGACAAATCGTATGAATTTGTACGAGTGAGGTTGTTCGAATTCGTATGAAATAGCCACCTTGTAAAATACATATGAATTGGTCATAAGATACAGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264743 lncRNA upstream 189796 8304082 ~ 8304448 (+) True G233305
TU264735 lncRNA upstream 202435 8291607 ~ 8291809 (+) True G233297
TU264700 lncRNA upstream 209691 8284276 ~ 8284553 (+) True G233262
TU264692 lncRNA upstream 228726 8264318 ~ 8265518 (+) True G233254
TU264662 lncRNA upstream 372544 8121096 ~ 8121700 (+) True G233233
TU264774 lncRNA downstream 27239 8521718 ~ 8522154 (+) True G233335
TU264776 lncRNA downstream 32355 8526834 ~ 8527577 (+) True G233337
TU264777 lncRNA downstream 33398 8527877 ~ 8528174 (+) True G233338
TU265964 lncRNA downstream 67118 8561597 ~ 8561807 (+) True G234433
TU265983 lncRNA downstream 78406 8572885 ~ 8573093 (+) True G234452
CI01000054_08419492_08424760.mRNA mRNA upstream 69323 8418619 ~ 8424921 (+) True CI01000054_08419492_08424760
CI01000054_08378811_08396034.mRNA mRNA upstream 98022 8378715 ~ 8396222 (+) True CI01000054_08378811_08396034
CI01000054_08377415_08378038.mRNA mRNA upstream 115555 8377125 ~ 8378689 (+) True CI01000054_08377415_08378038
CI01000054_08362528_08374374.mRNA mRNA upstream 119283 8362528 ~ 8374961 (+) True CI01000054_08362528_08374374
CI01000054_08336243_08350281.mRNA mRNA upstream 143330 8336243 ~ 8350914 (+) True CI01000054_08336243_08350281
CI01000054_08675009_08686170.mRNA mRNA downstream 180530 8675009 ~ 8686679 (+) True CI01000054_08675009_08686170
CI01000054_08695322_08702750.mRNA mRNA downstream 200843 8695322 ~ 8703309 (+) True CI01000054_08695322_08702750
CI01000054_08704697_08709175.mRNA mRNA downstream 210218 8704697 ~ 8709349 (+) True CI01000054_08704697_08709175
CI01000054_08725294_08727378.mRNA mRNA downstream 230685 8725164 ~ 8727830 (+) True CI01000054_08725294_08727378
CI01000054_08771624_08790335.mRNA mRNA downstream 277082 8771561 ~ 8790922 (+) True CI01000054_08771624_08790335
TU264679 other upstream 164656 8305937 ~ 8306053 (+) True G233242
TU264744 other upstream 189295 8304599 ~ 8304949 (+) True G233306
TU264435 other upstream 884351 7567523 ~ 7609893 (+) True G233024
TU264264 other upstream 1605741 6887912 ~ 6888503 (+) False G232870
TU264265 other upstream 1605741 6888114 ~ 6888503 (+) True G232870
TU267167 other downstream 1893657 10388136 ~ 10392378 (+) True G235560
TU267998 other downstream 3070497 11564976 ~ 11565121 (+) True G236317
TU268596 other downstream 3138497 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU268594 other downstream 3153500 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other downstream 3153500 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786

Expression Profile