RNA id: TU264774


Basic Information

Item Value
RNA id TU264774
length 437
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G233335
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8521718 ~ 8522154 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTCTAACTTGAAATGGTCTAAAATTGAATGAATGAATGAATGGAGGGTATTGAACAAGCGGTAGCCTCCTCCAGTTTCTCTTGAAGCCAATACGGAAGTGACTTAAACTGCAATTCATCGACTGGCCATTAGGGACAGGCTCCAAAAGAGAGCAGAATCTCATTGACCCCCATGTTAAAATGCCCAACTTTACAGCAGAAAAAAACATGTTTACAGCCTGGTACAAATTGTGGTTTTGGTCTATACAGCTAATTTTGCCCTTCATGACAACTGTGAGGGGGGTGAATTTTTTTATAACTCATCCATTTAAATTATATTAAGTCTTAAAGTTCTGCATAATTAAGGGCGTGGTCACTTGAGTGACAGGTAGATTGCCGCTGCTGTCTGTGAGCCGTCATGTTACCTCTGAATTTGGAATCTCTGCCGTGTTTGTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264761 lncRNA upstream 27239 8494244 ~ 8494479 (+) True G233322
TU264743 lncRNA upstream 217270 8304082 ~ 8304448 (+) True G233305
TU264735 lncRNA upstream 229909 8291607 ~ 8291809 (+) True G233297
TU264700 lncRNA upstream 237165 8284276 ~ 8284553 (+) True G233262
TU264692 lncRNA upstream 256200 8264318 ~ 8265518 (+) True G233254
TU264776 lncRNA downstream 4680 8526834 ~ 8527577 (+) True G233337
TU264777 lncRNA downstream 5723 8527877 ~ 8528174 (+) True G233338
TU265964 lncRNA downstream 39443 8561597 ~ 8561807 (+) True G234433
TU265983 lncRNA downstream 50731 8572885 ~ 8573093 (+) True G234452
TU266016 lncRNA downstream 75816 8597970 ~ 8598177 (+) True G234482
CI01000054_08485645_08496381.mRNA mRNA upstream 24853 8485428 ~ 8496865 (+) True CI01000054_08485645_08496381
CI01000054_08419492_08424760.mRNA mRNA upstream 96797 8418619 ~ 8424921 (+) True CI01000054_08419492_08424760
CI01000054_08378811_08396034.mRNA mRNA upstream 125496 8378715 ~ 8396222 (+) True CI01000054_08378811_08396034
CI01000054_08377415_08378038.mRNA mRNA upstream 143029 8377125 ~ 8378689 (+) True CI01000054_08377415_08378038
CI01000054_08362528_08374374.mRNA mRNA upstream 146757 8362528 ~ 8374961 (+) True CI01000054_08362528_08374374
CI01000054_08675009_08686170.mRNA mRNA downstream 152855 8675009 ~ 8686679 (+) True CI01000054_08675009_08686170
CI01000054_08695322_08702750.mRNA mRNA downstream 173168 8695322 ~ 8703309 (+) True CI01000054_08695322_08702750
CI01000054_08704697_08709175.mRNA mRNA downstream 182543 8704697 ~ 8709349 (+) True CI01000054_08704697_08709175
CI01000054_08725294_08727378.mRNA mRNA downstream 203010 8725164 ~ 8727830 (+) True CI01000054_08725294_08727378
CI01000054_08771624_08790335.mRNA mRNA downstream 249407 8771561 ~ 8790922 (+) True CI01000054_08771624_08790335
TU264679 other upstream 192130 8305937 ~ 8306053 (+) True G233242
TU264744 other upstream 216769 8304599 ~ 8304949 (+) True G233306
TU264435 other upstream 911825 7567523 ~ 7609893 (+) True G233024
TU264264 other upstream 1633215 6887912 ~ 6888503 (+) False G232870
TU267167 other downstream 1865982 10388136 ~ 10392378 (+) True G235560
TU267998 other downstream 3042822 11564976 ~ 11565121 (+) True G236317
TU268596 other downstream 3110822 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU268594 other downstream 3125825 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other downstream 3125825 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786

Expression Profile