RNA id: TU264776


Basic Information

Item Value
RNA id TU264776
length 744
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G233337
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8526834 ~ 8527577 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATGGAAAGACTTTTTAATGTTTACTGTTCTATTATGTTGGTATTTAAAAGTTTCTGTTAATTAATAGTTTTAGGGTTACCATTGTGGTGAATTGTTGCACTTGTGCTTGGGTTGAGGACCTGCTAACAAACTTTCAAATTACTTTAATAAGAAAGTAATCACTGTGGTAGTGCTCTGGGTTGCATTTCCCAAAAGCATTGTAAGCCTATGTTGATTGTAAAACCATTGCCACCAATGGACTTATGATCAACTTAGGCTTTACAATGTTTTTGGTTAAGGCAATTTAGGATGAATCCAGTATCACATCTAGATTTCTAACACAGAACATCACAAAAGTTATATAAATCACAAAATTAAACAAGAAGAATTAATTGTAAAAATCAATGTATATGAAAACTATTTATTATTTATTTATTTATTGCTTTTTATTTATTTTCCAAAACATTGCAAATTAGTTGGGCTGACACTATTAAATTAAGCTGTGCCCAACCATAGTAAATAAATTGAATCAACCTTAATAAATTAAGTTGACCCAACGTAAGTACATTAAATTGGAATAACAGAATTGCATAATGCTGAAATAAAGCAACTTAATCATGTGGAAATCCTTTCCATGATTTTTTTATGTTCGTTCAAAGAGTTATTTTTTTGAGTGTAATCTCTTAATGAGTCATGGGTGTGTTTTGGGCGTAACATGCAATAAACCAATCAGAGTCTCATCTCCCATTCCCTTTAAAAGCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264774 lncRNA upstream 4680 8521718 ~ 8522154 (+) True G233335
TU264761 lncRNA upstream 32355 8494244 ~ 8494479 (+) True G233322
TU264743 lncRNA upstream 222386 8304082 ~ 8304448 (+) True G233305
TU264735 lncRNA upstream 235025 8291607 ~ 8291809 (+) True G233297
TU264700 lncRNA upstream 242281 8284276 ~ 8284553 (+) True G233262
TU264777 lncRNA downstream 300 8527877 ~ 8528174 (+) True G233338
TU265964 lncRNA downstream 34020 8561597 ~ 8561807 (+) True G234433
TU265983 lncRNA downstream 45308 8572885 ~ 8573093 (+) True G234452
TU266016 lncRNA downstream 70393 8597970 ~ 8598177 (+) True G234482
TU266024 lncRNA downstream 92365 8619942 ~ 8620228 (+) True G234490
CI01000054_08485645_08496381.mRNA mRNA upstream 29969 8485428 ~ 8496865 (+) True CI01000054_08485645_08496381
CI01000054_08419492_08424760.mRNA mRNA upstream 101913 8418619 ~ 8424921 (+) True CI01000054_08419492_08424760
CI01000054_08378811_08396034.mRNA mRNA upstream 130612 8378715 ~ 8396222 (+) True CI01000054_08378811_08396034
CI01000054_08377415_08378038.mRNA mRNA upstream 148145 8377125 ~ 8378689 (+) True CI01000054_08377415_08378038
CI01000054_08362528_08374374.mRNA mRNA upstream 151873 8362528 ~ 8374961 (+) True CI01000054_08362528_08374374
CI01000054_08675009_08686170.mRNA mRNA downstream 147432 8675009 ~ 8686679 (+) True CI01000054_08675009_08686170
CI01000054_08695322_08702750.mRNA mRNA downstream 167745 8695322 ~ 8703309 (+) True CI01000054_08695322_08702750
CI01000054_08704697_08709175.mRNA mRNA downstream 177120 8704697 ~ 8709349 (+) True CI01000054_08704697_08709175
CI01000054_08725294_08727378.mRNA mRNA downstream 197587 8725164 ~ 8727830 (+) True CI01000054_08725294_08727378
CI01000054_08771624_08790335.mRNA mRNA downstream 243984 8771561 ~ 8790922 (+) True CI01000054_08771624_08790335
TU264679 other upstream 197246 8305937 ~ 8306053 (+) True G233242
TU264744 other upstream 221885 8304599 ~ 8304949 (+) True G233306
TU264435 other upstream 916941 7567523 ~ 7609893 (+) True G233024
TU264264 other upstream 1638331 6887912 ~ 6888503 (+) False G232870
TU267167 other downstream 1860559 10388136 ~ 10392378 (+) True G235560
TU267998 other downstream 3037399 11564976 ~ 11565121 (+) True G236317
TU268596 other downstream 3105399 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU268594 other downstream 3120402 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other downstream 3120402 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786

Expression Profile