RNA id: TU265964


Basic Information

Item Value
RNA id TU265964
length 211
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G234433
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8561597 ~ 8561807 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGAGTAAAGCTTGGGGTAATTTTCATTTTAAAGTGAACTAATCCTTTAACCTTAACCCTATAATAAATATATATGTAGATAATTAACATCTCACACTTATTTGTGTAATTACATTGTAACAACATTACATAAAGTGTAACCATGATTTTTTTTTTTCAACAGCCATTGTTTTTACAGTACAGTTGAGTTTAGAGTAGCTGCTCATTGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264777 lncRNA upstream 33423 8527877 ~ 8528174 (+) True G233338
TU264776 lncRNA upstream 34020 8526834 ~ 8527577 (+) True G233337
TU264774 lncRNA upstream 39443 8521718 ~ 8522154 (+) True G233335
TU264761 lncRNA upstream 67118 8494244 ~ 8494479 (+) True G233322
TU264743 lncRNA upstream 257149 8304082 ~ 8304448 (+) True G233305
TU265983 lncRNA downstream 11078 8572885 ~ 8573093 (+) True G234452
TU266016 lncRNA downstream 36163 8597970 ~ 8598177 (+) True G234482
TU266024 lncRNA downstream 58135 8619942 ~ 8620228 (+) True G234490
TU266029 lncRNA downstream 75129 8636936 ~ 8637164 (+) True G234495
TU266071 lncRNA downstream 211014 8772821 ~ 8773027 (+) True G234536
CI01000054_08485645_08496381.mRNA mRNA upstream 64732 8485428 ~ 8496865 (+) True CI01000054_08485645_08496381
CI01000054_08419492_08424760.mRNA mRNA upstream 136676 8418619 ~ 8424921 (+) True CI01000054_08419492_08424760
CI01000054_08378811_08396034.mRNA mRNA upstream 165375 8378715 ~ 8396222 (+) True CI01000054_08378811_08396034
CI01000054_08377415_08378038.mRNA mRNA upstream 182908 8377125 ~ 8378689 (+) True CI01000054_08377415_08378038
CI01000054_08362528_08374374.mRNA mRNA upstream 186636 8362528 ~ 8374961 (+) True CI01000054_08362528_08374374
CI01000054_08675009_08686170.mRNA mRNA downstream 113202 8675009 ~ 8686679 (+) True CI01000054_08675009_08686170
CI01000054_08695322_08702750.mRNA mRNA downstream 133515 8695322 ~ 8703309 (+) True CI01000054_08695322_08702750
CI01000054_08704697_08709175.mRNA mRNA downstream 142890 8704697 ~ 8709349 (+) True CI01000054_08704697_08709175
CI01000054_08725294_08727378.mRNA mRNA downstream 163357 8725164 ~ 8727830 (+) True CI01000054_08725294_08727378
CI01000054_08771624_08790335.mRNA mRNA downstream 209754 8771561 ~ 8790922 (+) True CI01000054_08771624_08790335
TU264679 other upstream 232009 8305937 ~ 8306053 (+) True G233242
TU264744 other upstream 256648 8304599 ~ 8304949 (+) True G233306
TU264435 other upstream 951704 7567523 ~ 7609893 (+) True G233024
TU264264 other upstream 1673094 6887912 ~ 6888503 (+) False G232870
TU267167 other downstream 1826329 10388136 ~ 10392378 (+) True G235560
TU267998 other downstream 3003169 11564976 ~ 11565121 (+) True G236317
TU268596 other downstream 3071169 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU268594 other downstream 3086172 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other downstream 3086172 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786

Expression Profile