RNA id: TCONS_00016735


Basic Information

Item Value
RNA id TCONS_00016735
length 2318
RNA type mRNA
GC content 0.55
exon number 17
gene id XLOC_008346
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 11693624 ~ 11757647 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAGGCGGAAAGATCCGGAGGGATGGCGGGCGGGACGAGTCAGAGCCCCGCGGGAAGTGGAACTGGGCGCAATCCTAACGGGCCGAAGGCTGTGCTCGGTCCCGCTCCCTCCGCAGTAGCAGCCGCCGCGGCCGGGCCAATGGCCGGATCCTCCCAGTCGCGAGATCAGCAGGACGGGGACGCAGGCCTCTCGCTGCCCGGGATCTTACATTTCATCCAATATGAATGGAGCCGCTTTCAAGCTGAGAAATACCGCTGGGAGGCCGAGCGAGACGAGCTGAGGGCTCAGGTGGCATTTCTGCAGGGTGAAAGGAAAGGTCAGGAGAACATGAAGCAGGATCTGGTGCGGAGAATTAAGATGCTGGAATACGCACTCAAACAGGAGAGGGCCAAACACCAGAAGCTGAAAAGTGGCACTGACCAGAGTCCTGGAGAGAAGAAACCAGAGACAGAAGCTGAACCAATACCCAATGGGCCTGCAAATTCAGACTCTGAACCGACCAATCAGATGCCTTGGAAGGAGGGACGCCAGTTATTGCGCAaGTATCTGGAGGAGGTGGGATACTCCGACACTATTCTGGACATGCGATCCAAACGCGTTCGCTCTCTGTTGGGTCGAAACAGCCCGGAGGCGAATGGGCCTCCTTCCAGCGAACCCACCACAGAACCAGAGCCGCATGTAGGagtaggaggaggaggagagtcaCTGCTGGTGCGGCAGATTGAGGAGCAGATCAAACGGCGTGCTGGAAAAGAGAGCTCTAAAGAGCGGATGGGCAGCTCAGTCCTGGACAAAATCCCTTTCCTGCGTGGATGTGAGGACGATGACGAGGATGACAGTGATGAAGAGGAAGACTTCCAGGGCATGACCACAGACTGCATTGATGGACGTAAAAACAAGAAGTCCAGAGCCAAGATGGGCGGAGAACCCATGACCACTGACCTGGACCCagaggatgaggatgatgaagatgactcTGAGGACGCCCTGGGAGAGTTTGACTTCTTGGCCTCTGGAGAAGAAGGGGAAGGGGCTGGAGAAGCTCGCATATCTGGAGACGGTCGAGAATTAGGTTCAGAGAACCGCCGGAACAAGTTACAAGGCATTATGTCAGATTTTCCCCCCAAACCCACTCCACCTCCGTCTATCCCGGGCCAGGCTCGCTCCGGTGAGGGAGGTGCTCTGGGCTTTTCATCCGATGTCTTCATTCTGGATGCAGTCGGAGGAGGAGACATGAACCTCGGAGAGCTGGCTGACCTCACTGTTGCCAACGACAACGACCTCACCATTGACTTGCAGGACAGTCGAGAAGAGTTCAAGAAAACGTGGAACCCTCGCTTCACACTGCGAAGCCACTTTGACGCCATCCGAGCGCTGTCCTTTCACCCCAGTCAGGCCGTGCTGCTGTCTGCATCTGAGGATGGGACGCTCAAACTGTGGAACCTCAACAAGGCCATGCACTCAAAAAAAAATGCAGCGCTGGACGTTGAGCCTATTTATACTTTCCGAGCACACAGTGGTGCTGTTCTTTCTCTGGCTATGGGAGAGGAAGGAGAATCATGCTTCAGCGGGGGTCTGGATGGCACCATTCGTGGATGGAAAATCCCAGACCTCAACGTGGATCCTTACGACAACTATGATCCTGGTGTGGAGAGTAGTGTTTTGTCAGGCCACGAGGACGCTGTCTGGGGATTGGCCTTCTCCTCCAGCCTACAGCGTTTGGCCTCCTGCTCCGCCGATGGGACAGTGCGCATCTGGGACCCTCATAATTCTTCCCCGTGTGTTTCTGTCTTCAACAAGGAGAAAGAACATGGCACTCCCACCTCGGTTGCCTTTGTAAATGCAGACCCGTCCCAGGTCGTGGTGTCTTTCGATGGGGGCGAGACTCTGCTTTATGACCTTAACACAGAGCAAAGTATCATGGTCCTGGAGACTCAGACTAAAGATGGCAGCGAGCTGATTAACCGTGTGGTCAGTCATCCGTCCCAACCCATCTCCATTACAGCCCATGAGAACCGCACCATCCGCTTCCTGGACAACAACACAGGGAAAGTGATTCATTCAATGGTGGCTCACCTGGATGCTGTTACCTGTCTTGCCACAGACCCTAAAGGCACTTACCTCATCTCCGGCAGTCATGACTGCTCAGTGCGCTTGTGGATGCTGGACAATCGCACGTGTGTGCAGGAGATCACAGCGCACAGGAAAAAACATGATGAGGCCATTCATGACGTGGCCTTCCACCCGTCGCAGCCCTTCATCGCCAGCGCCGGGGCCGATGCTCTCGCCAAGATCTTTGTTTAACTTTCTCACCG

Function

GO:

id name namespace
GO:0030425 dendrite cellular_component
GO:0051721 protein phosphatase 2A binding molecular_function
GO:0005516 calmodulin binding molecular_function
GO:0070016 armadillo repeat domain binding molecular_function
GO:0044877 protein-containing complex binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070501-3 Predicted to enable armadillo repeat domain binding activity; calmodulin binding activity; and protein phosphatase 2A binding activity. Predicted to be located in membrane. Predicted to be active in dendrite. Orthologous to human STRN4 (striatin 4).

Ensembl:

ensembl_id ENSDART00000161930

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016733 lncRNA upstream 2164 11683089 ~ 11691460 (+) False XLOC_008345
TCONS_00016734 lncRNA upstream 6840 11683120 ~ 11686784 (+) True XLOC_008345
TCONS_00016728 lncRNA upstream 388550 11303325 ~ 11305074 (+) True XLOC_008340
TCONS_00016727 lncRNA upstream 827064 10863850 ~ 10866560 (+) False XLOC_008339
TCONS_00018761 lncRNA upstream 827064 10864010 ~ 10866560 (+) True XLOC_008339
TCONS_00016741 lncRNA downstream 224803 11982450 ~ 11985783 (+) False XLOC_008350
TCONS_00018892 lncRNA downstream 224803 11982450 ~ 11986634 (+) False XLOC_008350
TCONS_00016742 lncRNA downstream 225374 11983021 ~ 11985807 (+) False XLOC_008350
TCONS_00016743 lncRNA downstream 225374 11983021 ~ 11986634 (+) False XLOC_008350
TCONS_00016744 lncRNA downstream 225499 11983146 ~ 11985958 (+) False XLOC_008350
TCONS_00016732 mRNA upstream 22451 11643659 ~ 11671173 (+) True XLOC_008344
TCONS_00016730 mRNA upstream 250410 11427620 ~ 11443214 (+) True XLOC_008342
TCONS_00016729 mRNA upstream 299302 11381532 ~ 11394322 (+) True XLOC_008341
TCONS_00016717 mRNA upstream 1820480 9861973 ~ 9873144 (+) True XLOC_008333
TCONS_00016714 mRNA upstream 2305834 9387350 ~ 9387790 (+) True XLOC_008328
TCONS_00016737 mRNA downstream 57322 11814969 ~ 11820549 (+) True XLOC_008347
TCONS_00016738 mRNA downstream 67719 11825366 ~ 11870530 (+) False XLOC_008348
TCONS_00016739 mRNA downstream 82664 11840311 ~ 11875820 (+) True XLOC_008348
TCONS_00016740 mRNA downstream 126157 11883804 ~ 11909082 (+) True XLOC_008349
TCONS_00016751 mRNA downstream 272720 12030367 ~ 12054746 (+) True XLOC_008352
TCONS_00016731 other upstream 128115 11565391 ~ 11565509 (+) True XLOC_008343
TCONS_00016719 other upstream 1797638 9895858 ~ 9895986 (+) True XLOC_008335
TCONS_00016712 other upstream 2382146 9303809 ~ 9311478 (+) True XLOC_008326
TCONS_00016703 other upstream 2654460 9039050 ~ 9039164 (+) True XLOC_008321
TCONS_00016700 other upstream 2961758 8731752 ~ 8731866 (+) True XLOC_008318
TCONS_00016757 other downstream 1767227 13524874 ~ 13524988 (+) True XLOC_008360
TCONS_00016758 other downstream 2200075 13957722 ~ 13957850 (+) True XLOC_008361
TCONS_00016791 other downstream 3636595 15394242 ~ 15401640 (+) True XLOC_008381
TCONS_00016809 other downstream 4761320 16518967 ~ 16519083 (+) True XLOC_008398
TCONS_00016813 other downstream 5072115 16829762 ~ 16829876 (+) True XLOC_008400

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000308_01110508_01122419.mRNA True 2521 mRNA 0.49 15 CI01000308 1110471 ~ 1122932 (-)