RNA id: TU266544


Basic Information

Item Value
RNA id TU266544
length 394
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G234982
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8796189 ~ 8796582 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCATAAAGGTGCTAAAAACATATGTAAATAAGTTCATGTGAGTACAGTGGTTCAATATTAATATTATAAAGCGACAAGAATATTTTTGGTGGGCCAAAAAAACCAAAATAACGAATTATTTAGTGATGGCCGATTTCAAAACACTGCTTCAGGAAGCTTCAGAGCATAATGAATCAGCGTGTCGAATCCGCAGTTCAGAGCGCCAAAGTCACGTGATTTCAGCAGTTTGGCGGTTTGACATGCGATCCGAATCATGATTCGACATGCTGATTCATTACGCTCCGAATCTTCCTGAAGCAGTGTTTTGAAATCAGCCATTACTAAATAAGTAGTTATTTTGGTTTTTTTGGTGCACCAAAAATATTCTCGTCGCTTTATAATATTAATATTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266531 lncRNA downstream 29515 8766445 ~ 8766674 (-) True G234969
TU266508 lncRNA downstream 62449 8733411 ~ 8733740 (-) True G234946
TU266502 lncRNA downstream 71981 8723919 ~ 8724208 (-) True CI01000054_08721571_08723333
TU266498 lncRNA downstream 90122 8705754 ~ 8706067 (-) True G234936
TU266497 lncRNA downstream 105594 8690311 ~ 8690595 (-) True G234935
TU266578 lncRNA upstream 42034 8838616 ~ 8838853 (-) True G235016
TU266588 lncRNA upstream 51702 8848284 ~ 8848634 (-) True G235026
TU266603 lncRNA upstream 66590 8863172 ~ 8863503 (-) True G235041
TU266611 lncRNA upstream 78690 8875272 ~ 8875540 (-) True G235049
TU266622 lncRNA upstream 97574 8894156 ~ 8894595 (-) True G235060
CI01000054_08721571_08723333.mRNA mRNA downstream 72107 8721008 ~ 8724082 (-) False CI01000054_08721571_08723333
CI01000054_08710955_08718087.mRNA mRNA downstream 78102 8710787 ~ 8718087 (-) True CI01000054_08710955_08718087
CI01000054_08692653_08694052.mRNA mRNA downstream 102137 8692139 ~ 8694052 (-) True CI01000054_08692653_08694052
CI01000054_08652832_08667152.mRNA mRNA downstream 127260 8652789 ~ 8668929 (-) False CI01000054_08652832_08667152
CI01000054_08574533_08590975.mRNA mRNA downstream 204897 8574480 ~ 8591292 (-) True CI01000054_08574533_08590975
CI01000054_08937312_08942587.mRNA mRNA upstream 140730 8937312 ~ 8942587 (-) True CI01000054_08937312_08942587
CI01000054_08953766_08966617.mRNA mRNA upstream 155552 8952134 ~ 8966617 (-) True CI01000054_08953766_08966617
CI01000054_09077309_09080163.mRNA mRNA upstream 280249 9076831 ~ 9080812 (-) True CI01000054_09077309_09080163
CI01000054_09218869_09223868.mRNA mRNA upstream 422050 9218632 ~ 9224119 (-) False CI01000054_09218869_09223868
CI01000054_09453616_09482480.mRNA mRNA upstream 655527 9452109 ~ 9482723 (-) True CI01000054_09453616_09482480
TU265381 other downstream 1624516 7171325 ~ 7171673 (-) True G233891
TU265088 other downstream 2142176 6649149 ~ 6654013 (-) True G233619
TU263564 other downstream 3586949 5206199 ~ 5209240 (-) True G232274
TU263226 other downstream 4123956 4672197 ~ 4672233 (-) True G231958
TU266788 other upstream 451457 9248039 ~ 9248538 (-) True G235216
TU266868 other upstream 686565 9485215 ~ 9485318 (-) False G235290
TU266867 other upstream 686770 9485215 ~ 9485318 (-) False G235290
TU266866 other upstream 686868 9485215 ~ 9485318 (-) False G235290
TU266865 other upstream 686902 9485215 ~ 9485318 (-) False G235290

Expression Profile