RNA id: TU266627


Basic Information

Item Value
RNA id TU266627
length 707
lncRNA type antisense_over
GC content 0.45
exon number 3
gene id G235064
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8897888 ~ 8912476 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAGATATAAACTCACAACGTTGCAATTCCCAAAATGGTACTCTGAAGTACTTCAAAGAAAACCATGGTACTATTATGGTATTATGGATTATTATGTCTAAAAATGGGTAATTTTGGCAGTTTTTTGTTAGTGCTGCTGGCTTACCTGGGCTTTTGGAGGCCAGTTTCTCTGACTCTTTGGGAGTGCGGAACAGAACAGGTTCACTCAGGGGGCTGGTGCCGCTCATGCTAATGGACTGCACATGCACAATGTACTCTGTGTCTTCCTCCAAGTCCCATAATGCACATGAACGAGTGGTGGTGTTCACTTCCTGGATGAATCGCAGCATACGTACGTCCTTCTTCTGCTGGGTGATGGCAAACCCGATGACTGGGTCTCCTTCCAGAATGTCCCATGTCACTATCGCTGAGTTCCCCTCCAGTGCTTTGATGGTCACATTGAGTGGAGCAGATAAACTGTCGGCGTAAACCAAGGACACGGAGATATAAGCCAAAAACAACAATAACAGCGCAGCACACGAGCCTTTAATTCCCCACATCCTTCAAGGAATTCTTTACATTCTGTTCGGAAGACGTTGAATCCCATTTACTCGCAAGATTTTTAAACTTATAAGTCGGCGTCTATGTGTTTAACATTCACGACTGGTTGCCGTCTTTATTCCTGCATCAGTCCAGAACAGCACTGGATCTAAACTCCGTACTTGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266623 lncRNA downstream 2351 8894973 ~ 8895537 (-) True G235061
TU266622 lncRNA downstream 3293 8894156 ~ 8894595 (-) True G235060
TU266611 lncRNA downstream 22348 8875272 ~ 8875540 (-) True G235049
TU266603 lncRNA downstream 34385 8863172 ~ 8863503 (-) True G235041
TU266588 lncRNA downstream 49254 8848284 ~ 8848634 (-) True G235026
TU266649 lncRNA upstream 61537 8974013 ~ 8974310 (-) True G235084
TU266645 lncRNA upstream 61917 8974393 ~ 8974682 (-) True G235080
TU266661 lncRNA upstream 74625 8987101 ~ 8987407 (-) True G235096
TU266662 lncRNA upstream 75201 8987677 ~ 8987940 (-) True G235097
TU266664 lncRNA upstream 76421 8988897 ~ 8989099 (-) True G235099
CI01000054_08721571_08723333.mRNA mRNA downstream 173806 8721008 ~ 8724082 (-) False CI01000054_08721571_08723333
CI01000054_08710955_08718087.mRNA mRNA downstream 179801 8710787 ~ 8718087 (-) True CI01000054_08710955_08718087
CI01000054_08692653_08694052.mRNA mRNA downstream 203836 8692139 ~ 8694052 (-) True CI01000054_08692653_08694052
CI01000054_08652832_08667152.mRNA mRNA downstream 228959 8652789 ~ 8668929 (-) False CI01000054_08652832_08667152
CI01000054_08574533_08590975.mRNA mRNA downstream 306596 8574480 ~ 8591292 (-) True CI01000054_08574533_08590975
CI01000054_08937312_08942587.mRNA mRNA upstream 24836 8937312 ~ 8942587 (-) True CI01000054_08937312_08942587
CI01000054_08953766_08966617.mRNA mRNA upstream 39658 8952134 ~ 8966617 (-) True CI01000054_08953766_08966617
CI01000054_09077309_09080163.mRNA mRNA upstream 164355 9076831 ~ 9080812 (-) True CI01000054_09077309_09080163
CI01000054_09218869_09223868.mRNA mRNA upstream 306156 9218632 ~ 9224119 (-) False CI01000054_09218869_09223868
CI01000054_09453616_09482480.mRNA mRNA upstream 539633 9452109 ~ 9482723 (-) True CI01000054_09453616_09482480
TU265381 other downstream 1726215 7171325 ~ 7171673 (-) True G233891
TU265088 other downstream 2243875 6649149 ~ 6654013 (-) True G233619
TU263564 other downstream 3688648 5206199 ~ 5209240 (-) True G232274
TU263226 other downstream 4225655 4672197 ~ 4672233 (-) True G231958
TU266788 other upstream 335563 9248039 ~ 9248538 (-) True G235216
TU266868 other upstream 570671 9485215 ~ 9485318 (-) False G235290
TU266867 other upstream 570876 9485215 ~ 9485318 (-) False G235290
TU266866 other upstream 570974 9485215 ~ 9485318 (-) False G235290
TU266865 other upstream 571008 9485215 ~ 9485318 (-) False G235290

Expression Profile