RNA id: TCONS_00016739


Basic Information

Item Value
RNA id TCONS_00016739
length 6355
RNA type mRNA
GC content 0.38
exon number 8
gene id XLOC_008348
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 11825366 ~ 11875820 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGGCAtcagtcagcatttctgtgtcTAACAGCCAGATTCAAGAAAATGTGGACATTGGAATGTTCTACCAGATCTTTGCTGATGAGGTTCTGGGCTCTGGACAATTCGGTGTGGTTTATGGAGGAAAACACCGGAAAAGCGGCCGGGATGTTGCTGTGAAGGTGATTGACAAGCTTCGCTTCCCCACCAAGCAGGAAAGTCAACTGAGGAATGAAGTGGCCATACTGCAGAGCCTGCGACATTTGGGTATAGTGAATCTGGAGTGTATGTTTGAGACACCGGAGAAGGTGTTTGTGGTTATGGAGAAACTTCACGGTGACATGCTTGAGATGATTCTGTCCAGTGAGAAAGGAAGACTTCCTGAGAGGCTCACCAAGTTCCTTATAACACAGATTTTGGCTGCTCTGAGACATCTTCACTTCAAAAACATTGTGCACTGTGACCTCAAACCTGAGAATGTGCTGTTGGCATCAGCTGATCCTTTCCCACAGGTGAAACTTTGTGACTTTGGTTTTGCTCGCATCATTGGAGAAAAGTCTTTCCGTCGTTCTGTCGTTGGCACGCCGGCTTACTTGGCCCCCGAAGTACTCCTGAACCAGGGTTACAATCGCTCTCTGGACATGTGGTCAGTCGGAGTGATAATGTATGTCAGTCTGAGCGGGACGTTCCCCTTTAATGAGGATGAGGACATCAACGATCAGATCCACAATGCAGCTTTCATGTACCCGCCGAACCCCTGGAAACAGATCTCTCCTGACGCTACCGACCTCATCAATAACCTGCTCCAAGTGAAGATGAGAAAGCGCTATAGTGTGGATAAGAGTCTCAGTCATGCCTATCTGCAGGATTACCAGACCTGGCTGGACCTGCGAGAGCTGGAGTCAAAGCTAGGGGAACGTTATATAACTCACGAGAGTGATGACAGCCGCTGGCAGCAGTATGCCCGGGACCACACGCTGCCGTACCCCCCTCACCTGGTTCCCCCGCCACCTGCATCCGACGACGAGGATGGCAATGAGGATGCCGACATGCAGGGCCTGACAGAGCGGGTTAGCATCCTATGAGGAAGAAAGAAATCAGAGGAATGAAGAGTTACCTGCCAGAACTTAAGCAATTTCTAAGTGTAGGAAGTGTATTCATGAGGCCctctgtgaaaacaaaacaaaacaaaacaagacatagTTTGGGTTGTGTCTTTGGTGGCTGACTGCAGGCCCTCTGAACTCTGACTTTCTTCAACTAGAGGACTGTGTTTCTGAGACGCACATATTAAAGTGGAACTCCTTTGGATCCCAACAAAGACCTTCACATTGGTGATGGCTGATTGTAAGTGAATAACAAAATGAAATTGTACAAAATGCACAAGTTTTAAAGAAAGCCCTAATTTAATTAGGTTGGATTTGGGTTCACCAATTTTAACAATttcttaaggtgctttcacatttACCagtgtttatcatttatttttttattttatttttttttggagagGATGATATCCAGTCATTTCAGAAGGAATCTATGCTAGGGGAAAGATTTATCTTGCAATTTAAGGGGCCTTCTACACAAGAATGTCAAAACAGCCAAAAAACGGGAAAATTTTTTATATGgtttgcctgtttgtttacagGACAAGGTGATTTTTCAGCAATGAAAATGTGTAAAATGGAAAAAGTGGAGGTTTTTGAAAAGACAGTCATGTCATGTCCGTGTAAACacctgaaaacaaaaagtcattgAAACCTTCATTACATGCCGACGTAGTACTATAGTTGTTTAGGTAagcccgtagccagggggttcGGGTTGTTCGAAAGACCCagccctcactgacaaaggtccagaatttgcccCATACATGActtcatttgtcctattttgactgctgtgCAATCATACATTGTAAACATACAATCTAAtataagtgaagtcatctttcactactgtattgtttttaccaggaacttttattttaaatcttgaaccttattcttgaaacaaaaaaagacCAATGCTATGGTGTCAAGCACCAAAAGCGACCATTTGGCTATTGTTGTGaaccatgaattttcaaatgtacttttttggtaatgatgaccatctgacaatctatttcagataaaatattacttaaaatgtcactaaaatgcagtatttaaatcttataATTAAATAGTAGTCTAAATGAGGACTATAACcacaaaaaggtccacattttggGAAAAAAACACTGCTTTCAGCAGGCTGGCTACGGGTATGTTAGGTGAGTGTAGATTAAGGCCCAATCCtgattctatttttgtacccctaccccttccccttggcccttacaaccgagggtgaagggaaagggctttaaaatgtacccctaagaattgggacagcattacagcacctgcacacgtcatcatatgtcatcgcgatctttTGTTTCATATGAGATTAGTgttttttattggtatttatcttcaggaaatcactgaaggcatatattatgttatcataaagatctaatgtggcaaaaaaaaatatcataactgtactgtgcatttgcaCAGAGGCCATATTCATGTAAAgataccaaaaacaacattattattaaagcAGACAcagtaaaaagcccattcccagcaaCTAGatattactgacagggtattcgagtgtcatcgagtgacaaaATGTTGTGGAACTGCAgtacaagagttattattatggattatagatcggAAAAAATTacgaatttttaatttttttaagcatgacggtaaagcatgaacgcggttatgaatatattaaaacatgtgcttgttttttgtaaaaaatcataATACTGACagaaatactaatttgtggatctccttactttcgGTTGCAGTGATtttgccgttgtggctggtggaTTCAGAGAAATTTTCTTAtaccttggttttgagtgtggtcctatAAAAAAATTCGAAGAGATATTCACCCCTTGTCCTTAGCtttacgccttcaagctaaaaagaaaTCGGGACACCCCTATCCCTTGATGTGAACGTGCAAAAAAGGGGTAGGTgtaaagggaagggctaaggggtagaattgtgaTTGGGCTAAAAAGCAAGCGCAAAAATTGAGAGACAACCATGTGGCAGACTATGTGGTAGTGTTGTTACTAAAATGTTTTCTAATGCTTGATCAGCAAAGTGTGTATTTACGTTACAGTATGACGTAAATACACACTTATAAGTTGAGACACACACTGCAAATTATACATAGAGATGAGCACCAAGCTGCTATCAACACGTCGTCTTCTCTACAGGTACTGCAGGTACAGCACCAAATACTAGCCTGGCATATGTAAGTGTTTTTGGCcatttttgtgaatttgtgtAAAAGCAGatcattttgaaaatgacttGCAGGTGGAAAACTTTTCCATTATTGGCTAGGTCACTGtcatgtaaatgcagccttagctTGTTATATAACCCTTATTTTACCAGGTAATTTAATTAagaaccagttctcatttacaatCACAAACTGGCCAAGGGGCAACATAAAAAGCAAATGCGGAGCAATAAAGACACAATACAATAATTTCACAGATGCAGATAATAACTTATAAAACCaaggaaaaactaaaaataagCACAGTGATCTTGTTACTGGATAAAATTTTTATTAGAATCACTGTTCACCAACAAAACGGTACTCAGTTTGAAAGTGACTACAGTGTGACCTGTGCTGTACTATTGACAATGACAATGTTTTACCCATAAATATTTTATGTGACCTTAACATTGCGGAAAAAAATACCACATTTTTAAAAGCTGGGATATTTTTAACTTGGCATAGCATTTTAAAAGTGACAATGTAGAGGTTGTTTTTATGGTCTAAAGTTATACATCTACTATAATATTGTTAGTACTGTTTTAATCTTTTGAGCAGATATGGCAGATATTCTCTGTGAGATGCATTAGAATACagttaaaatgctatttaattgATGTTTTCAAGGCAAAGCATATCTCTGCATTCCTGCATTCCTGTTTGATATTTGTATGAATAAGATATGATATTCAGTAATGCCACACAAGCGTTGTTTTCCTGAGTATTAGTGACTGAGAGATGTATACATTAATATTTGGGTGACAAGTGTACATTCTAAACACAGTGTTGTGTTAATTCTGTTTCGCTGATGAATGTAGTTTCTTTGCATAACTTTAGTATAGCTTAGAGCAAATCAAGTGCGCCAATGATTCAATAATCCATTCATAAAGGCAGtcacatatttaaaaacaaataaaaattaatcagCCATTTTGAACGAATCGATTGATTTCAACTCGGCCTCTTTCTAATTATGtaatgctatatacatttctggagagagcaaaatagcTCTCAGGAGctgcaatttattattattttatttattattattattttattttatttattattgcagatttagttttttttttttgcaaatccaccagaggcagatGTGTGCGCTCTTTGTGATCTCAagtttctcttgcgagtgccatttgtccCTGCTGTTCTTGCaaaaatccaccaaaggccacttTCAACTTATTGACTAACCAACTGACAGATGACCCTACCCTCCCTGTTCtgtaaacccaatcaatagtgttttaaaaagcaccaattgacctgcccacccactttcctaaacccaaccaaagatccagaaaaagaaaagccccctgatttttaccacattttcagattttaccacattctcaccttattatttacttgtttattttatttttagcttttgtttttgtcttatctgctttctggaaccattctttaccATACTCGAACTCCAGTGTTgagtcaactctgctctgcatctcaagtctgccgacgtacatatCGAACTATGGGAAaaaccaatgcaatctcacgccaattcgtaattttttgatttagtggctaattcgtatgaattagcacAATCTAATTCCTATAATTTACTACgtatttgctcatcacccaatgacggttggggttagaggtagggttgggtgccacgcctcctttttaaaatcgtacattttcataggACTTATTTTGTTTAGCCACAAAAcgaacaaaacgtaaaatacttgcgtttcctcgtgagatctggctgaacaaactggtaacagcggaaaactCATTCATATGGAGGTAATCAATGAGCTGGTAAGCACACAAAGGAACAGCATTTTacctgtagcgtttgttttaaagataaaacgGAGCCATACGTAGCTTTGGTTACAtaatttgctctctccagaaatgtacatagggctatgttttcagaatgagcctttgttgatTAAATTAGTGATTTAACAATACTCGTGATTTAGTGTCACATATTTTTAAATCCAAAATGACCTAAACCAGCTGAGATACCATTATAAAAGCacactcaacaacaacaaaaaaatattaaaagcctCCAAAAAATATCAAGGTCAATTTTTCCCATGCTTTTAGTGCAAACTGCTAATGAGATATTGCAACATTTACTGAATATCTTCTGCATTTTTTTGTTTCGAAACCAGTAGTTTCGACAGTAATCTGTGAGATCTGTTTGATGTGAGGTTGAAAAACTTCCCCTATTAGATTCGGCTACAGTTGCTTCTGCAGTTCATGTGAATTCAGCCTATTGACTAGCAGAGAAATCTGTTTGTGTGAAAGTGAATGTTAAGTGAGCTTTGATTTATCCATTGCCTTGCTTTGGACATTTTTTTGCCCACAAATTCATTATTAATTGACAATTATGACTCATCCCAAATTTGTTATATGCAAAAGACTGATATCAAGCTGGGAGTCTCCATCACCTTTAGTTTCAGATCAACTTTTTATATATTACTGAGAATACTTTTTAACAGCTTTTAACAATACAACTGGAAAGAAACTCTCACATATTGGTGTTTTCCTGTATCTTGTCATTTGTTTTCCCTGAAGGTGCAACTGACTTCGCTTCTGAGAAAGGATGATTTTCTTGTTTAGAGGACTGATAAATGGTCTCCTAGTCCTTTTCGTCCCATACTGTCTAAAAGGACAAAATGAGTGCACAAAGACTACCTAGACTGTTCTCTGATCAGCTGTTGTTAGTTCAACTGATCTCTGCTAGTACTAGTCGCACTGGATGTGTAATTTTACTCCTGACCCTAGACCTGAGCATTAGGCTGCATGTCACTGAGAATTAGGTTTGCTTGAAACTTATTGCTATGAAGGACTATTTTGTACACATGTAACCTTAGAAATTATGTAGTTTTGGATGGGACTCTCAGAGCATTTCCATCAGTATAATAAACATGGTGATGAATAACTGTT

Function

GO:

id name namespace
GO:0089700 protein kinase D signaling biological_process
GO:0006468 protein phosphorylation biological_process
GO:0003272 endocardial cushion formation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131120-142 Predicted to enable ATP binding activity and calcium-dependent protein kinase C activity. Acts upstream of or within endocardial cushion formation. Is expressed in brain; gut; and heart. Orthologous to human PRKD2 (protein kinase D2).

Ensembl:

ensembl_id ENSDART00000167671

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016733 lncRNA upstream 148851 11683089 ~ 11691460 (+) False XLOC_008345
TCONS_00016734 lncRNA upstream 153527 11683120 ~ 11686784 (+) True XLOC_008345
TCONS_00016728 lncRNA upstream 535237 11303325 ~ 11305074 (+) True XLOC_008340
TCONS_00016727 lncRNA upstream 973751 10863850 ~ 10866560 (+) False XLOC_008339
TCONS_00018761 lncRNA upstream 973751 10864010 ~ 10866560 (+) True XLOC_008339
TCONS_00016741 lncRNA downstream 106630 11982450 ~ 11985783 (+) False XLOC_008350
TCONS_00018892 lncRNA downstream 106630 11982450 ~ 11986634 (+) False XLOC_008350
TCONS_00016742 lncRNA downstream 107201 11983021 ~ 11985807 (+) False XLOC_008350
TCONS_00016743 lncRNA downstream 107201 11983021 ~ 11986634 (+) False XLOC_008350
TCONS_00016744 lncRNA downstream 107326 11983146 ~ 11985958 (+) False XLOC_008350
TCONS_00016737 mRNA upstream 19762 11814969 ~ 11820549 (+) True XLOC_008347
TCONS_00016736 mRNA upstream 82664 11693624 ~ 11757647 (+) False XLOC_008346
TCONS_00016735 mRNA upstream 82664 11693624 ~ 11757647 (+) True XLOC_008346
TCONS_00016732 mRNA upstream 169138 11643659 ~ 11671173 (+) True XLOC_008344
TCONS_00016730 mRNA upstream 397097 11427620 ~ 11443214 (+) True XLOC_008342
TCONS_00016740 mRNA downstream 7984 11883804 ~ 11909082 (+) True XLOC_008349
TCONS_00016751 mRNA downstream 154547 12030367 ~ 12054746 (+) True XLOC_008352
TCONS_00016752 mRNA downstream 502067 12377887 ~ 12388434 (+) True XLOC_008354
TCONS_00016753 mRNA downstream 553386 12429206 ~ 12451734 (+) False XLOC_008355
TCONS_00016754 mRNA downstream 560155 12435975 ~ 12459335 (+) False XLOC_008355
TCONS_00016731 other upstream 274802 11565391 ~ 11565509 (+) True XLOC_008343
TCONS_00016719 other upstream 1944325 9895858 ~ 9895986 (+) True XLOC_008335
TCONS_00016712 other upstream 2528833 9303809 ~ 9311478 (+) True XLOC_008326
TCONS_00016703 other upstream 2801147 9039050 ~ 9039164 (+) True XLOC_008321
TCONS_00016700 other upstream 3108445 8731752 ~ 8731866 (+) True XLOC_008318
TCONS_00016757 other downstream 1649054 13524874 ~ 13524988 (+) True XLOC_008360
TCONS_00016758 other downstream 2081902 13957722 ~ 13957850 (+) True XLOC_008361
TCONS_00016791 other downstream 3518422 15394242 ~ 15401640 (+) True XLOC_008381
TCONS_00016809 other downstream 4643147 16518967 ~ 16519083 (+) True XLOC_008398
TCONS_00016813 other downstream 4953942 16829762 ~ 16829876 (+) True XLOC_008400

Expression Profile

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