RNA id: TU266175


Basic Information

Item Value
RNA id TU266175
length 330
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G234636
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 9067578 ~ 9067907 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTGCGCCCATTTGTGTGCCCATGGGCGTGCTGGCCTGAAAACGAGGTGTGTTCAGGCGCATTGTTGGTGTGTTGCTATTTTTAGGCAACTGAAATAGACTGCGCCATTGACCAACTAAAATTCTGGTCTAAAGTTAATGGCGCAATATTTTTTGTTATTTAAAGAGTGCGTTAGTAATATGCGCCTATAGGTGCGTGTACACTCTGCTTATTACACACAAACATGCCAATGTAAAATTGTACAATGTACATTACAATGTAAAAGATTATTATTGTGTGCATAAGAATAAAAATCCTTTGGTAGAATCCGGCTTGTCCCATAGAAGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266124 lncRNA upstream 92901 8974009 ~ 8974677 (+) False G234588
TU266125 lncRNA upstream 92901 8974393 ~ 8974677 (+) True G234588
TU266144 lncRNA upstream 134943 8932373 ~ 8932635 (+) True G234606
TU266140 lncRNA upstream 186924 8880349 ~ 8880654 (+) True G234602
TU266112 lncRNA upstream 245516 8821734 ~ 8822062 (+) True G234577
TU266180 lncRNA downstream 7801 9075708 ~ 9075917 (+) True G234641
TU266182 lncRNA downstream 8665 9076572 ~ 9076797 (+) True G234643
TU266194 lncRNA downstream 20843 9088750 ~ 9089035 (+) True G234652
TU266203 lncRNA downstream 29810 9097717 ~ 9098004 (+) True G234661
TU266268 lncRNA downstream 101706 9169613 ~ 9169822 (+) True G234723
CI01000054_08975450_08984634.mRNA mRNA upstream 82403 8975359 ~ 8985175 (+) True CI01000054_08975450_08984634
CI01000054_08969979_08973590.mRNA mRNA upstream 93912 8969979 ~ 8973666 (+) True CI01000054_08969979_08973590
CI01000054_08908112_08917294.mRNA mRNA upstream 149983 8908112 ~ 8917595 (+) True CI01000054_08908112_08917294
CI01000054_08771624_08790335.mRNA mRNA upstream 276656 8771561 ~ 8790922 (+) True CI01000054_08771624_08790335
CI01000054_08725294_08727378.mRNA mRNA upstream 339748 8725164 ~ 8727830 (+) True CI01000054_08725294_08727378
CI01000054_09151300_09164780.mRNA mRNA downstream 82878 9150785 ~ 9164938 (+) True CI01000054_09151300_09164780
CI01000054_09232327_09233391.mRNA mRNA downstream 164092 9231999 ~ 9234242 (+) True CI01000054_09232327_09233391
CI01000054_09437674_09440443.mRNA mRNA downstream 368436 9436343 ~ 9441827 (+) True CI01000054_09437674_09440443
CI01000054_09485610_09487896.mRNA mRNA downstream 417334 9485241 ~ 9487967 (+) False CI01000054_09485610_09487896
CI01000054_09556901_09561363.mRNA mRNA downstream 488370 9556277 ~ 9561580 (+) True CI01000054_09556901_09561363
TU264679 other upstream 737990 8305937 ~ 8306053 (+) True G233242
TU264744 other upstream 762629 8304599 ~ 8304949 (+) True G233306
TU264435 other upstream 1457685 7567523 ~ 7609893 (+) True G233024
TU264264 other upstream 2179075 6887912 ~ 6888503 (+) False G232870
TU267167 other downstream 1320229 10388136 ~ 10392378 (+) True G235560
TU267998 other downstream 2497069 11564976 ~ 11565121 (+) True G236317
TU268596 other downstream 2565069 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU268594 other downstream 2580072 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other downstream 2580072 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786

Expression Profile