RNA id: TU266194


Basic Information

Item Value
RNA id TU266194
length 286
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G234652
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 9088750 ~ 9089035 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCATTTTGTAGGGCTCGGGCTCTAGGATGAAGATTGACTTAGGCATCCGCTCTGGTGCTGGCATCATGGCTGGCTCAAGCTCAATGACTGCGGTGGGCTCTGGCTTTAATTCTGCGGGGGGCATGGCTGAAGGCGCGAAGTGCGTTCCGTTGACACTGGCATTGTGATCCTCCTCCATCTCCAGGACTAAGTCACAGCAGTTGATTTATTAGCAACTCAAAAAGGTAACAGAGGCACTCTGGATATCACAGGATTTAAACATGAACAGAACAGAATTTAACTTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266182 lncRNA upstream 11953 9076572 ~ 9076797 (+) True G234643
TU266180 lncRNA upstream 12833 9075708 ~ 9075917 (+) True G234641
TU266175 lncRNA upstream 20843 9067578 ~ 9067907 (+) True G234636
TU266124 lncRNA upstream 114073 8974009 ~ 8974677 (+) False G234588
TU266125 lncRNA upstream 114073 8974393 ~ 8974677 (+) True G234588
TU266203 lncRNA downstream 8682 9097717 ~ 9098004 (+) True G234661
TU266268 lncRNA downstream 80578 9169613 ~ 9169822 (+) True G234723
TU266270 lncRNA downstream 82705 9171740 ~ 9171976 (+) True G234725
TU266290 lncRNA downstream 114682 9203717 ~ 9203965 (+) True G234745
TU266293 lncRNA downstream 120036 9209071 ~ 9210518 (+) False G234748
CI01000054_08975450_08984634.mRNA mRNA upstream 103575 8975359 ~ 8985175 (+) True CI01000054_08975450_08984634
CI01000054_08969979_08973590.mRNA mRNA upstream 115084 8969979 ~ 8973666 (+) True CI01000054_08969979_08973590
CI01000054_08908112_08917294.mRNA mRNA upstream 171155 8908112 ~ 8917595 (+) True CI01000054_08908112_08917294
CI01000054_08771624_08790335.mRNA mRNA upstream 297828 8771561 ~ 8790922 (+) True CI01000054_08771624_08790335
CI01000054_08725294_08727378.mRNA mRNA upstream 360920 8725164 ~ 8727830 (+) True CI01000054_08725294_08727378
CI01000054_09151300_09164780.mRNA mRNA downstream 61750 9150785 ~ 9164938 (+) True CI01000054_09151300_09164780
CI01000054_09232327_09233391.mRNA mRNA downstream 142964 9231999 ~ 9234242 (+) True CI01000054_09232327_09233391
CI01000054_09437674_09440443.mRNA mRNA downstream 347308 9436343 ~ 9441827 (+) True CI01000054_09437674_09440443
CI01000054_09485610_09487896.mRNA mRNA downstream 396206 9485241 ~ 9487967 (+) False CI01000054_09485610_09487896
CI01000054_09556901_09561363.mRNA mRNA downstream 467242 9556277 ~ 9561580 (+) True CI01000054_09556901_09561363
TU264679 other upstream 759162 8305937 ~ 8306053 (+) True G233242
TU264744 other upstream 783801 8304599 ~ 8304949 (+) True G233306
TU264435 other upstream 1478857 7567523 ~ 7609893 (+) True G233024
TU264264 other upstream 2200247 6887912 ~ 6888503 (+) False G232870
TU267167 other downstream 1299101 10388136 ~ 10392378 (+) True G235560
TU267998 other downstream 2475941 11564976 ~ 11565121 (+) True G236317
TU268596 other downstream 2543941 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU268594 other downstream 2558944 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other downstream 2558944 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786

Expression Profile